Bug 2034574
| Summary: | apbs fails to build with Python 3.11: ValueError: invalid mode: 'rU' | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Tomáš Hrnčiar <thrnciar> |
| Component: | apbs | Assignee: | Antonio T. sagitter <trpost> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | mhroncok, thrnciar, tim.fenn |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2022-01-04 16:59:08 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 2016048 | ||
Python-3.11 Copr project is currently unworkable: Error: Problem: package python3-numpy-1:1.21.5-1.fc36.x86_64 requires python(abi) = 3.10, but none of the providers can be installed - package python3-devel-3.11.0~a3-2.fc36.x86_64 conflicts with python3 < 3.11.0~a3-2.fc36 provided by python3-3.10.1-1.fc36.i686 - package python3-devel-3.11.0~a3-2.fc36.x86_64 conflicts with python3 < 3.11.0~a3-2.fc36 provided by python3-3.10.1-1.fc36.x86_64 - cannot install the best candidate for the job (try to add '--skip-broken' to skip uninstallable packages or '--nobest' to use not only best candidate packages) It was caused by new version of numpy which wasn't building with Python 3.11. I've backported upstreams commit and opened PR to bring it to Fedora [0]. With fixed numpy, apbs fails again with the failure reported in this bugzilla [1]. [0] https://src.fedoraproject.org/rpms/numpy/pull-request/20 [1] https://copr.fedorainfracloud.org/coprs/g/python/python3.11/build/3122346/ This bug should be fixed in build release 'apbs-3.0.0-13' |
apbs fails to build with Python 3.11.0a3. Traceback (most recent call last): File "/builddir/build/BUILD/apbs-3.0.0/tests/./apbs_tester.py", line 339, in <module> sys.exit(main()) ^^^^^^ File "/builddir/build/BUILD/apbs-3.0.0/tests/./apbs_tester.py", line 332, in main run_test(binary, config.items(test_name), test_name, test_directory, test_setup, logger, options.ocd) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/apbs-3.0.0/tests/./apbs_tester.py", line 184, in run_test computed_results = process_parallel(binary, input_file, procs, logger) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/apbs-3.0.0/tests/./apbs_tester.py", line 111, in process_parallel split_input(input_file) ^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/apbs-3.0.0/tests/../tools/manip/inputgen.py", line 269, in split_input file = open(filename, 'rU') ^^^^^^^^^^^^^^^^^^^^ ValueError: invalid mode: 'rU' open(), io.open(), codecs.open() and fileinput.FileInput no longer accept 'U' (“universal newline”) in the file mode. This flag was deprecated since Python 3.3. In Python 3, the “universal newline” is used by default when a file is open in text mode. The newline parameter of open() controls how universal newlines works. (Contributed by Victor Stinner in bpo-37330.) https://bugs.python.org/issue37330 https://docs.python.org/3.11/whatsnew/3.11.html For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.11/fedora-rawhide-x86_64/03052569-apbs/ For all our attempts to build apbs with Python 3.11, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.11/package/apbs/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.11: https://copr.fedorainfracloud.org/coprs/g/python/python3.11/ Let us know here if you have any questions. Python 3.11 is planned to be included in Fedora 37. To make that update smoother, we're building Fedora packages with all pre-releases of Python 3.11. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.