Bug 2045230

Summary: bout++: FTBFS in Fedora rawhide/f36
Product: [Fedora] Fedora Reporter: Fedora Release Engineering <releng>
Component: bout++Assignee: david08741
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: rawhideCC: david08741, zbyszek
Target Milestone: ---Keywords: Reopened
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
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Clone Of: Environment:
Last Closed: 2022-03-26 15:05:01 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On:    
Bug Blocks: 1992484, 2052520    
Attachments:
Description Flags
build.log
none
root.log
none
state.log none

Description Fedora Release Engineering 2022-01-25 16:11:54 UTC 
bout++ failed to build from source in Fedora rawhide/f36

https://koji.fedoraproject.org/koji/taskinfo?taskID=81770037


For details on the mass rebuild see:

https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
Please fix bout++ at your earliest convenience and set the bug's status to
ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks,
bout++ will be orphaned. Before branching of Fedora 37,
bout++ will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit:
https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/
Comment 1 Fedora Release Engineering 2022-01-25 16:11:58 UTC 
Created attachment 1853737 [details]
build.log

file build.log too big, will only attach last 32768 bytes
Comment 2 Fedora Release Engineering 2022-01-25 16:12:01 UTC 
Created attachment 1853738 [details]
root.log

file root.log too big, will only attach last 32768 bytes
Comment 3 Fedora Release Engineering 2022-01-25 16:12:03 UTC 
Created attachment 1853739 [details]
state.log
Comment 4 Zbigniew Jędrzejewski-Szmek 2022-02-09 09:59:19 UTC 
Unfortunately it fails again:

----- test-restart-io_hdf5 -----
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
ERROR: ld.so: object '/usr/lib64/libSegFault.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.
Making restart I/O test
Grid sizes:  8 16 4
Traceback (most recent call last):
  File "/builddir/build/BUILD/BOUT++-v4.4.1/build_mpich/tests/integrated/test-restart-io_hdf5/./runtest", line 77, in <module>
    restart.redistribute(nproc, path=restartdir, output='data')
  File "/usr/lib/python3.10/site-packages/boutdata/restart.py", line 641, in redistribute
    jyseps2_1 = f["jyseps2_1"]
  File "/usr/lib/python3.10/site-packages/boututils/datafile.py", line 319, in __getitem__
    return self.impl.__getitem__(name)
  File "/usr/lib/python3.10/site-packages/boututils/datafile.py", line 817, in __getitem__
    raise KeyError("No variable found: " + name)
KeyError: 'No variable found: jyseps2_1'

======= 2 failed in 323.15 seconds ========
make: *** [makefile:49: check-integrated-tests] Error 1
++ exit 1
Comment 5 david08741 2022-02-28 21:31:20 UTC 
Fixed in rawhide:
https://koschei.fedoraproject.org/package/bout++?collection=f37

For F36 I will have to wait for the beta freeze to end.
Comment 6 Fedora Update System 2022-02-28 21:33:41 UTC 
FEDORA-2022-002068eba9 has been submitted as an update to Fedora 36. https://bodhi.fedoraproject.org/updates/FEDORA-2022-002068eba9
Comment 7 Zbigniew Jędrzejewski-Szmek 2022-03-01 07:27:36 UTC 
Thanks!
Comment 8 Fedora Update System 2022-03-01 16:31:48 UTC 
FEDORA-2022-002068eba9 has been pushed to the Fedora 36 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2022-002068eba9`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-002068eba9

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
Comment 9 Fedora Update System 2022-03-26 15:05:01 UTC 
FEDORA-2022-002068eba9 has been pushed to the Fedora 36 stable repository.
If problem still persists, please make note of it in this bug report.