Bug 2118949

Summary: Encourage upstreams to release Python 3.11 manylinux wheels before Fedora 37 final release
Product: [Fedora] Fedora Reporter: Tomáš Hrnčiar <thrnciar>
Component: python3.11Assignee: Tomáš Hrnčiar <thrnciar>
Status: CLOSED NEXTRELEASE QA Contact:
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: 37CC: cbm, cstratak, maxwell, mhroncok, python-maint, python-sig, thrnciar, torsava, vstinner
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
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Clone Of: Environment:
Last Closed: 2022-11-08 16:28:16 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On:    
Bug Blocks: 2016048    

Description Tomáš Hrnčiar 2022-08-17 08:03:54 UTC 
This is a tracking bugzilla inspired by bz1875767 and bz1989081.

Python 3.11.0rc1 was released and the ABI is frozen and cannot change even for bug fixes.

We should encourage upstreams to release manylinux wheels as soon as the first rc is out. users of Fedora 37 will likely use Python 3.11 and when they `pip install numpy` etc., it should work flawlessly -- we should encourage upstreams to have the manylinux wheels ready, so pip does not attempt to compile stuff which is slow and often breaks for missing development dependencies.

Ideally, we want the wheels to be ready before the final release, but if we don't make it, we still want them to be released ASAP.

Here is the list of packages we used the last time:


---------


NumPy - done


For matplotlib:

Pillow - done
kiwisolver - done
matplotlib - done (not yet released) https://github.com/matplotlib/matplotlib/issues/23645


For Jupyter Notebook:

pyzmq - done
MarkupSafe - done
cffi - done
tornado - done

Others:

pandas - https://github.com/pandas-dev/pandas/issues/48121
scipy - https://github.com/scipy/scipy/issues/16851


---------

Note that cython has universal wheel available, so I've moved it from the list.


Verification:

$ python3.11 -m venv __venv__
$ . __venv__/bin/activate
(__venv__) $ pip install numpy matplotlib notebook pandas scipy

No packages (with extension modules) should be compiled locally, they should be installed from wheels.
Comment 1 Miro Hrončok 2022-08-17 10:38:48 UTC 
The situation has improved a lot compared to 3.10.0rc1 release. Awesome!
Comment 2 Miro Hrončok 2022-09-29 14:45:44 UTC 
matplotlib done

pandas done

still waiting for scipy, "Yes, I think we can/should do a 1.9.2 release within the next 2 weeks." https://github.com/scipy/scipy/issues/16851#issuecomment-1259286446
Comment 3 Miro Hrončok 2022-10-09 17:42:39 UTC 
scipy has released 1.9.2 with the wheels



This would indicate this BZ is done, but it seems we now also now psutil:

<mock-chroot> sh-5.1$ pip install numpy matplotlib notebook pandas scipy
Defaulting to user installation because normal site-packages is not writeable
Collecting numpy
  Downloading numpy-1.23.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
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Collecting matplotlib
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Collecting notebook
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Collecting pandas
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Collecting scipy
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Collecting contourpy>=1.0.1
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Collecting cycler>=0.10
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Collecting fonttools>=4.22.0
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Collecting kiwisolver>=1.0.1
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Collecting packaging>=20.0
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Collecting pillow>=6.2.0
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Collecting pyparsing>=2.2.1
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Collecting python-dateutil>=2.7
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Collecting tornado>=6.1
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Collecting pyzmq>=17
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Collecting argon2-cffi
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Collecting traitlets>=4.2.1
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Collecting jupyter-core>=4.6.1
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Collecting ipython-genutils
  Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting nbformat
  Downloading nbformat-5.6.1-py3-none-any.whl (77 kB)
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Collecting nbconvert>=5
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Collecting Send2Trash>=1.8.0
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  Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB)
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Collecting bleach
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Collecting defusedxml
  Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
Collecting jupyterlab-pygments
  Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB)
Collecting markupsafe>=2.0
  Downloading MarkupSafe-2.1.1.tar.gz (18 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
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Collecting mistune<3,>=2.0.3
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Collecting pandocfilters>=1.4.1
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Collecting asttokens
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Collecting pure-eval
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Building wheels for collected packages: markupsafe, psutil, pyrsistent
  Building wheel for markupsafe (pyproject.toml) ... done
  Created wheel for markupsafe: filename=MarkupSafe-2.1.1-py3-none-any.whl size=9650 sha256=0ee1bcd5e1b1e3fa10cd68d5d81bb38e28269f9097a7f9733a17e8a45400a6bc
  Stored in directory: /builddir/.cache/pip/wheels/f2/8e/9e/4ee907ff6fb9e145722f0506c46ad9516302d1f424b43220e5
  Building wheel for psutil (pyproject.toml) ... error
  error: subprocess-exited-with-error
  
  × Building wheel for psutil (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [43 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.linux-x86_64-cpython-311
      creating build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/__init__.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_common.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_compat.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_psaix.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_psbsd.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_pslinux.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_psosx.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_psposix.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_pssunos.py -> build/lib.linux-x86_64-cpython-311/psutil
      copying psutil/_pswindows.py -> build/lib.linux-x86_64-cpython-311/psutil
      creating build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/__init__.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/__main__.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/runner.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_aix.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_bsd.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_connections.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_contracts.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_linux.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_memleaks.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_misc.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_osx.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_posix.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_process.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_sunos.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_system.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_testutils.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_unicode.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      copying psutil/tests/test_windows.py -> build/lib.linux-x86_64-cpython-311/psutil/tests
      running build_ext
      building 'psutil._psutil_linux' extension
      creating build/temp.linux-x86_64-cpython-311
      creating build/temp.linux-x86_64-cpython-311/psutil
      gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=592 -DPSUTIL_LINUX=1 -DPSUTIL_ETHTOOL_MISSING_TYPES=1 -I/usr/include/python3.11 -c psutil/_psutil_common.c -o build/temp.linux-x86_64-cpython-311/psutil/_psutil_common.o
      C compiler or Python headers are not installed on this system. Try to run:
      sudo yum install gcc python3-devel
      error: command 'gcc' failed: No such file or directory
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for psutil
  Building wheel for pyrsistent (pyproject.toml) ... done
  Created wheel for pyrsistent: filename=pyrsistent-0.18.1-cp311-cp311-linux_x86_64.whl size=56385 sha256=14a0f2e7920f2f71a68697dcc568adfdcef6a86ca3eb0f95f437acc11ff2e8bb
  Stored in directory: /builddir/.cache/pip/wheels/8c/e4/47/14060cdf4ed767bf542f57310493b608973aed234559e41860
Successfully built markupsafe pyrsistent
Failed to build psutil
ERROR: Could not build wheels for psutil, which is required to install pyproject.toml-based projects
Comment 4 Miro Hrončok 2022-10-09 17:43:32 UTC 
https://github.com/giampaolo/psutil/issues/2089
Comment 5 Tomáš Hrnčiar 2022-10-21 07:29:28 UTC 
Pull request regarding psutils Python 3.11 wheels was merged. Once it's released on PyPI, I'll verify if it works and we can close this BZ.
Comment 6 Miro Hrončok 2022-10-31 15:15:43 UTC 
No response to my upstream issue comment from 10 days ago: https://github.com/giampaolo/psutil/issues/2089#issuecomment-1286688683 -- but users started to file multiple issues about failed installation with 3.11, so hopefully this will get resolved soon.
Comment 7 Miro Hrončok 2022-11-08 16:28:16 UTC 
$ pip install numpy matplotlib notebook pandas scipy
Defaulting to user installation because normal site-packages is not writeable
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Building wheels for collected packages: markupsafe
  Building wheel for markupsafe (pyproject.toml) ... done
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Installing collected packages: webencodings, wcwidth, Send2Trash, pytz, pure-eval, ptyprocess, pickleshare, mistune, ipython-genutils, fastjsonschema, executing, backcall, websocket-client, traitlets, tornado, tinycss2, soupsieve, sniffio, six, pyzmq, pyrsistent, pyparsing, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, markupsafe, kiwisolver, jupyterlab-pygments, idna, fonttools, entrypoints, defusedxml, decorator, debugpy, cycler, attrs, terminado, scipy, python-dateutil, packaging, matplotlib-inline, jupyter-core, jsonschema, jinja2, jedi, contourpy, cffi, bleach, beautifulsoup4, asttokens, anyio, stack-data, pandas, nbformat, matplotlib, jupyter-client, argon2-cffi-bindings, nbclient, ipython, argon2-cffi, nbconvert, ipykernel, jupyter-server, notebook-shim, nbclassic, notebook
Successfully installed Send2Trash-1.8.0 anyio-3.6.2 argon2-cffi-21.3.0 argon2-cffi-bindings-21.2.0 asttokens-2.1.0 attrs-22.1.0 backcall-0.2.0 beautifulsoup4-4.11.1 bleach-5.0.1 cffi-1.15.1 contourpy-1.0.6 cycler-0.11.0 debugpy-1.6.3 decorator-5.1.1 defusedxml-0.7.1 entrypoints-0.4 executing-1.2.0 fastjsonschema-2.16.2 fonttools-4.38.0 idna-3.4 ipykernel-6.17.0 ipython-8.6.0 ipython-genutils-0.2.0 jedi-0.18.1 jinja2-3.1.2 jsonschema-4.17.0 jupyter-client-7.4.4 jupyter-core-4.11.2 jupyter-server-1.23.0 jupyterlab-pygments-0.2.2 kiwisolver-1.4.4 markupsafe-2.1.1 matplotlib-3.6.2 matplotlib-inline-0.1.6 mistune-2.0.4 nbclassic-0.4.8 nbclient-0.7.0 nbconvert-7.2.3 nbformat-5.7.0 nest-asyncio-1.5.6 notebook-6.5.2 notebook-shim-0.2.2 numpy-1.23.4 packaging-21.3 pandas-1.5.1 pandocfilters-1.5.0 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.3.0 prometheus-client-0.15.0 prompt-toolkit-3.0.32 psutil-5.9.4 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.21 pygments-2.13.0 pyparsing-3.0.9 pyrsistent-0.19.2 python-dateutil-2.8.2 pytz-2022.6 pyzmq-24.0.1 scipy-1.9.3 six-1.16.0 sniffio-1.3.0 soupsieve-2.3.2.post1 stack-data-0.6.0 terminado-0.17.0 tinycss2-1.2.1 tornado-6.2 traitlets-5.5.0 wcwidth-0.2.5 webencodings-0.5.1 websocket-client-1.4.2