Bug 2120751
| Summary: | Error compiling a PETSc program | ||||||
|---|---|---|---|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Rafel Amer <rafel.amer> | ||||
| Component: | petsc | Assignee: | Antonio T. sagitter <trpost> | ||||
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||
| Severity: | unspecified | Docs Contact: | |||||
| Priority: | unspecified | ||||||
| Version: | 36 | CC: | trpost | ||||
| Target Milestone: | --- | ||||||
| Target Release: | --- | ||||||
| Hardware: | Unspecified | ||||||
| OS: | Unspecified | ||||||
| Whiteboard: | |||||||
| Fixed In Version: | petsc-3.16.4-4.fc36 petsc-3.17.4-2.fc37 | Doc Type: | --- | ||||
| Doc Text: | Story Points: | --- | |||||
| Clone Of: | Environment: | ||||||
| Last Closed: | 2022-09-04 22:45:02 UTC | Type: | Bug | ||||
| Regression: | --- | Mount Type: | --- | ||||
| Documentation: | --- | CRM: | |||||
| Verified Versions: | Category: | --- | |||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||
| Embargoed: | |||||||
| Attachments: |
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FEDORA-2022-fea01db0ce has been submitted as an update to Fedora 37. https://bodhi.fedoraproject.org/updates/FEDORA-2022-fea01db0ce FEDORA-2022-b584048fe7 has been submitted as an update to Fedora 36. https://bodhi.fedoraproject.org/updates/FEDORA-2022-b584048fe7 FEDORA-2022-fea01db0ce has been pushed to the Fedora 37 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2022-fea01db0ce` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-fea01db0ce See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. FEDORA-2022-b584048fe7 has been pushed to the Fedora 36 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2022-b584048fe7` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-b584048fe7 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. FEDORA-2022-b584048fe7 has been pushed to the Fedora 36 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-2022-fea01db0ce has been pushed to the Fedora 37 stable repository. If problem still persists, please make note of it in this bug report. |
Created attachment 1907168 [details] The file e.c Compile and run the program e.c from the book PETSc for Partial Differential Equations: Numerical Solutions in C and Python Version-Release number of selected component: Fedora 36 How reproducible: Steps to Reproduce: 1. Install the packages openmpi, openmpi-dev3el, petsc-openmpi and petsc-openmpi-devel 2. To have the files e.c and Makefile 3. ~$ cat Makefile e: e.o ${CLINKER} -o e e.o ${PETSC_LIB} include ${PETSC_DIR}/lib64/openmpi/lib/petsc/conf/variables include ${PETSC_DIR}/lib64/openmpi/lib/petsc/conf//rules 4. Run the commands ~$ export PETSC_DIR=/usr ~$ make e /usr/lib64/openmpi/bin/mpicc -o e.o -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I/usr/lib64/gfortran/modules/openmpi/petsc -I/usr/include/openmpi-x86_64/hypre -I/usr/include/openmpi-x86_64/superlu_dist -I/usr/include/flexiblas `pwd`/e.c /usr/lib64/openmpi/bin/mpicc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -o e e.o -L/usr/lib64/openmpi/lib -L/usr//lib -L/usr/lib64/openmpi/lib -lpetsc -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lsuperlu_dist -lflexiblas -lptscotch -lscotch -lptscotcherr -lscotcherr -lcgns -lhdf5 -lhdf5_hl -lmetis -lm -lX11 -lquadmath -lstdc++ -ldl -lmpi -lmpi_mpifh /usr/bin/ld: cannot open linker script file /builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld: No such file or directory collect2: error: ld returned 1 exit status make: *** [Makefile:2: e] Error 1 Actual results: /usr/bin/ld: cannot open linker script file /builddir/build/BUILD/petsc-3.16.4/.package_note-petsc-3.16.4-3.fc36.x86_64.ld: No such file or directory Expected results: Correct compilation of the program Additional info: