Bug 2213903

Summary: python-netpyne: FTBFS in Fedora Rawhide
Product: [Fedora] Fedora Reporter: Ankur Sinha (FranciscoD) <sanjay.ankur>
Component: python-netpyneAssignee: Ankur Sinha (FranciscoD) <sanjay.ankur>
Status: CLOSED RAWHIDE QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: medium Docs Contact:
Priority: unspecified    
Version: rawhideCC: gui1ty, neuro-sig, sanjay.ankur
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Linux   
URL: https://koschei.fedoraproject.org/package/python-netpyne
Whiteboard:
Fixed In Version: Doc Type: If docs needed, set a value
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2023-07-26 09:52:15 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On: 1944501, 2155217    
Bug Blocks:    

Description Ankur Sinha (FranciscoD) 2023-06-09 20:09:07 UTC
Description of problem:
Package python-netpyne fails to build from source in Fedora Rawhide.

Version-Release number of selected component (if applicable):
1.0.4.1-1.fc39

Steps to Reproduce:
koji build --scratch f39 python-netpyne-1.0.4.1-1.fc39.src.rpm

Additional info:
This package is tracked by Koschei. See:
https://koschei.fedoraproject.org/package/python-netpyne

Reproducible: Always

Comment 1 Ankur Sinha (FranciscoD) 2023-06-09 20:10:01 UTC
Requires an update to bokeh from the looks of it.

Warning: could not import interactive plotting functions; make sure the "bokeh" package is installed.
Traceback (most recent call last):
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 171, in <module>
    main()
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 167, in main
    import_modules(modules)
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 100, in import_modules
    importlib.import_module(module)
  File "/usr/lib64/python3.11/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1206, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1178, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1149, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 940, in exec_module
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "/builddir/build/BUILDROOT/python-netpyne-1.0.4.1-1.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne/analysis/interactive.py", line 44, in <module>
    from bokeh.io import curdoc
  File "/usr/lib/python3.11/site-packages/bokeh/io/__init__.py", line 23, in <module>
    from .export import export_png, export_svg, export_svgs
  File "/usr/lib/python3.11/site-packages/bokeh/io/export.py", line 33, in <module>
    from ..document import Document
  File "/usr/lib/python3.11/site-packages/bokeh/document/__init__.py", line 35, in <module>
    from .document import DEFAULT_TITLE ; DEFAULT_TITLE
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/bokeh/document/document.py", line 50, in <module>
    from ..core.templates import FILE
  File "/usr/lib/python3.11/site-packages/bokeh/core/templates.py", line 42, in <module>
    from jinja2 import Environment, FileSystemLoader, Markup
ImportError: cannot import name 'Markup' from 'jinja2' (/usr/lib/python3.11/site-packages/jinja2/__init__.py)