Bug 2291888
| Summary: | python-pyunicorn fails to build in Fedora Rawhide: SystemError: <method 'distances' of 'igraph._igraph.GraphBase' objects> returned NULL without setting an exception | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Fedora Fails To Install <fti-bugs> |
| Component: | python-pyunicorn | Assignee: | Ankur Sinha (FranciscoD) <sanjay.ankur> |
| Status: | CLOSED RAWHIDE | QA Contact: | |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | 42 | CC: | gui1ty, ksurma, mhroncok, neuro-sig, sanjay.ankur |
| Target Milestone: | --- | Keywords: | Reopened |
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | python-pyunicorn-0.7.0~a1-9.20230730gitmaster.fc42 | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2025-03-18 22:08:04 UTC | Type: | --- |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | 2291596, 2291633, 2291644 | ||
| Bug Blocks: | 2300529, 2244836 | ||
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Description
Fedora Fails To Install
2024-06-12 11:29:01 UTC
The dependencies are all sorted out, but 29 tests fail during the %check with:
return np.array(
> self.graph.distances(weights=link_attribute, mode=1))
E SystemError: <method 'distances' of 'igraph._igraph.GraphBase' objects> returned NULL without setting an exception
See: https://kojipkgs.fedoraproject.org/work/tasks/4149/119604149/build.log
This appears to be an issue with Python 3.13. The package builds fine on F40, which has the same version of `igraph`. Reported upstream. Response from upstream (sigh):
> Python 3.13 builds are not yet included in [Pyunicorn's CI](https://github.com/pik-copan/pyunicorn/blob/3079fdaff333c6254d322003d1c93ea1eb22f5ff/.travis.yml#L39-L45). Will definitely look into this in the future. Currently, Python 3.8/3.9/3.10/3.11/3.12 are actively maintained.
>
> If you need to run Python 3.13 and can find a fix, feel free to send a PR! š
Rather than being prepared, they prefer to wait until š© hits fan? I mean Python 3.13 is actively maintained, just not released yet.
Well, pyunicorn is a leaf package. I guess we can sit this one out.
> I guess we can sit this one out.
So, retire the package?
(In reply to Miro HronÄok from comment #4) > > I guess we can sit this one out. > > So, retire the package? If that's what the Fedora policies require, yep. We'll unretire it when it's fixed upstream. I will note that Py3.13, irrespective of how well maintained it is, is still an unreleased version of Python until the 1st of October. So upstreams are withing their rights to say "we'll support it when it's released". They're not expected to proactively work to support unreleased software versions (Python or others), and we should be mindful of that. (This also goes for numpy2.x for example---most upstreams will not actively keep an eye on numpy changes and only began working on fixes after numpy2.x was released). Having said all that, it looks like they did make a fix for py3.13: https://github.com/igraph/python-igraph/commit/8abba79c19675f39e4648e9b03bcd000b965ee3c I'll go see if that fixes our build now. (In reply to Ankur Sinha (FranciscoD) from comment #6) > Having said all that, it looks like they did make a fix for py3.13: > https://github.com/igraph/python-igraph/commit/ > 8abba79c19675f39e4648e9b03bcd000b965ee3c > > I'll go see if that fixes our build now. Awesome! It's actually a fix in python-igraph, not pyunicorn (but python-igraph didn't ever FTBFS probably because it doesnt run any tests, nor check imports?). I'll submit a PR for that now, and am testing if the igraph fix also fixes pyunicorn in a COPR here: https://copr.fedorainfracloud.org/coprs/ankursinha/pyunicorn/builds/ I think so. I have an enable-test commit ready in https://src.fedoraproject.org/fork/churchyard/rpms/python-igraph/commits/test-fix3.13 in case you want to take it. Ah, sorry, I did that too. Just opened a PR: https://src.fedoraproject.org/rpms/python-igraph/pull-request/3 Also confirmed that pyunicorn builds with this fixed version of python-igraph: https://copr.fedorainfracloud.org/coprs/ankursinha/pyunicorn/builds/ So, we need to merge that PR, build the fixed igraph, and then build pyunicorn (or do them together in a side tag). FEDORA-2024-2004225b17 (python-igraph-0.11.6-3.fc42 and python-pyunicorn-0.7.0~a1-9.20230730gitmaster.fc42) has been submitted as an update to Fedora 42. https://bodhi.fedoraproject.org/updates/FEDORA-2024-2004225b17 FEDORA-2024-2004225b17 (python-igraph-0.11.6-3.fc42 and python-pyunicorn-0.7.0~a1-9.20230730gitmaster.fc42) has been pushed to the Fedora 42 stable repository. If problem still persists, please make note of it in this bug report. Hello, Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/ All subpackages of a package against which this bug was filled are now installable or removed from Fedora 41. Thanks for taking care of it! Hello, Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/ All subpackages of a package against which this bug was filled are now installable or removed from Fedora 43. Thanks for taking care of it! This bug appears to have been reported against 'rawhide' during the Fedora Linux 42 development cycle. Changing version to 42. Build issue was solved a while ago. |