Bug 2417960
| Summary: | openms fails to build with pip 25.3 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> |
| Component: | openms | Assignee: | Antonio T. sagitter <sagitterghostproton.me> |
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | ||
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | openms-3.5.0-1.20260107git91afebf.fc43 | Doc Type: | --- |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2026-01-17 00:48:15 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 2384424, 2406299 | ||
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Description
Miro Hrončok
2025-12-01 09:47:36 UTC
I also noticed in the latest Koji build of openms with pip 25.2: https://koji.fedoraproject.org/koji/buildinfo?buildID=2820144 ... Building wheels for collected packages: pyopenms DEPRECATION: Building 'pyopenms' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyopenms'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for pyopenms (setup.py): started Building wheel for pyopenms (setup.py): finished with status 'done' Upstream fix: https://github.com/OpenMS/OpenMS/commit/36227d14c021cc61b113919bfaf7f6458bb5adeb from https://github.com/OpenMS/OpenMS/pull/8345 This package has changed maintainer in Fedora. Reassigning to the new maintainer of this component. FEDORA-2026-4d1e0aeb9b (autowrap-0.25.0-2.fc43 and openms-3.5.0-1.20260107git91afebf.fc43) has been submitted as an update to Fedora 43. https://bodhi.fedoraproject.org/updates/FEDORA-2026-4d1e0aeb9b FEDORA-2026-4d1e0aeb9b has been pushed to the Fedora 43 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2026-4d1e0aeb9b` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2026-4d1e0aeb9b See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. FEDORA-2026-4d1e0aeb9b (autowrap-0.25.0-2.fc43 and openms-3.5.0-1.20260107git91afebf.fc43) has been pushed to the Fedora 43 stable repository. If problem still persists, please make note of it in this bug report. |