Bug 2424321
| Summary: | scipy fails to build with Python 3.15: AssertionError: Not equal to tolerance rtol=0.03125, atol=0 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Karolina Surma <ksurma> |
| Component: | scipy | Assignee: | Nikola Forró <nforro> |
| Status: | CLOSED NOTABUG | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | cstratak, david08741, ksurma, mhroncok, nforro, psimovec, python-packagers-sig |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | --- | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2026-01-23 16:13:56 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 2412434 | ||
These are COPR specific failures, not related to Python 3.15. |
scipy fails to build with Python 3.15.0a3. _______________ TestDerivative.test_dtype[numpy-float16-0.65--1] _______________ [gw0] linux -- Python 3.15.0 /usr/bin/python3 self = <scipy.differentiate.tests.test_differentiate.TestDerivative object at 0x7f6c12969130> hdir = -1, x = array(0.65, dtype=float16), dtype = <class 'numpy.float16'> xp = <module 'scipy._lib.array_api_compat.numpy' from '/builddir/build/BUILD/scipy-1.16.2-build/BUILDROOT/usr/lib64/python3.15/site-packages/scipy/_lib/array_api_compat/numpy/__init__.py'> @pytest.mark.parametrize("hdir", (-1, 0, 1)) @pytest.mark.parametrize("x", (0.65, [0.65, 0.7])) @pytest.mark.parametrize("dtype", ('float16', 'float32', 'float64')) def test_dtype(self, hdir, x, dtype, xp): if dtype == 'float16' and not is_numpy(xp): pytest.skip('float16 not tested for alternative backends') # Test that dtypes are preserved dtype = getattr(xp, dtype) x = xp.asarray(x, dtype=dtype) def f(x): assert x.dtype == dtype return xp.exp(x) def callback(res): assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype res = derivative(f, x, order=4, step_direction=hdir, callback=callback) assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype eps = xp.finfo(dtype).eps # not sure why torch is less accurate here; might be worth investigating rtol = eps**0.5 * 50 if is_torch(xp) else eps**0.5 > xp_assert_close(res.df, xp.exp(res.x), rtol=rtol) E AssertionError: E Not equal to tolerance rtol=0.03125, atol=0 E E Mismatched elements: 1 / 1 (100%) E Max absolute difference among violations: 0.296 E Max relative difference among violations: 0.1545 E ACTUAL: array(2.21, dtype=float16) E DESIRED: array(1.915, dtype=float16) scipy/differentiate/tests/test_differentiate.py:328: AssertionError ________________ TestDerivative.test_dtype[numpy-float16-x1--1] ________________ [gw0] linux -- Python 3.15.0 /usr/bin/python3 self = <scipy.differentiate.tests.test_differentiate.TestDerivative object at 0x7f6c12969310> hdir = -1, x = array([0.65, 0.7 ], dtype=float16) dtype = <class 'numpy.float16'> xp = <module 'scipy._lib.array_api_compat.numpy' from '/builddir/build/BUILD/scipy-1.16.2-build/BUILDROOT/usr/lib64/python3.15/site-packages/scipy/_lib/array_api_compat/numpy/__init__.py'> @pytest.mark.parametrize("hdir", (-1, 0, 1)) @pytest.mark.parametrize("x", (0.65, [0.65, 0.7])) @pytest.mark.parametrize("dtype", ('float16', 'float32', 'float64')) def test_dtype(self, hdir, x, dtype, xp): if dtype == 'float16' and not is_numpy(xp): pytest.skip('float16 not tested for alternative backends') # Test that dtypes are preserved dtype = getattr(xp, dtype) x = xp.asarray(x, dtype=dtype) def f(x): assert x.dtype == dtype return xp.exp(x) def callback(res): assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype res = derivative(f, x, order=4, step_direction=hdir, callback=callback) assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype eps = xp.finfo(dtype).eps # not sure why torch is less accurate here; might be worth investigating rtol = eps**0.5 * 50 if is_torch(xp) else eps**0.5 > xp_assert_close(res.df, xp.exp(res.x), rtol=rtol) E AssertionError: E Not equal to tolerance rtol=0.03125, atol=0 E E Mismatched elements: 1 / 2 (50%) E Max absolute difference among violations: 0.296 E Max relative difference among violations: 0.1545 E ACTUAL: array([2.21 , 1.996], dtype=float16) E DESIRED: array([1.915, 2.014], dtype=float16) scipy/differentiate/tests/test_differentiate.py:328: AssertionError ________________ TestDerivative.test_dtype[numpy-float16-x1-1] _________________ [gw0] linux -- Python 3.15.0 /usr/bin/python3 self = <scipy.differentiate.tests.test_differentiate.TestDerivative object at 0x7f6c12969450> hdir = 1, x = array([0.65, 0.7 ], dtype=float16) dtype = <class 'numpy.float16'> xp = <module 'scipy._lib.array_api_compat.numpy' from '/builddir/build/BUILD/scipy-1.16.2-build/BUILDROOT/usr/lib64/python3.15/site-packages/scipy/_lib/array_api_compat/numpy/__init__.py'> @pytest.mark.parametrize("hdir", (-1, 0, 1)) @pytest.mark.parametrize("x", (0.65, [0.65, 0.7])) @pytest.mark.parametrize("dtype", ('float16', 'float32', 'float64')) def test_dtype(self, hdir, x, dtype, xp): if dtype == 'float16' and not is_numpy(xp): pytest.skip('float16 not tested for alternative backends') # Test that dtypes are preserved dtype = getattr(xp, dtype) x = xp.asarray(x, dtype=dtype) def f(x): assert x.dtype == dtype return xp.exp(x) def callback(res): assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype res = derivative(f, x, order=4, step_direction=hdir, callback=callback) assert res.x.dtype == dtype assert res.df.dtype == dtype assert res.error.dtype == dtype eps = xp.finfo(dtype).eps # not sure why torch is less accurate here; might be worth investigating rtol = eps**0.5 * 50 if is_torch(xp) else eps**0.5 > xp_assert_close(res.df, xp.exp(res.x), rtol=rtol) E AssertionError: E Not equal to tolerance rtol=0.03125, atol=0 E E Mismatched elements: 1 / 2 (50%) E Max absolute difference among violations: 2.268 E Max relative difference among violations: 1.126 E ACTUAL: array([1.894, 4.28 ], dtype=float16) E DESIRED: array([1.915, 2.014], dtype=float16) FAILED scipy/differentiate/tests/test_differentiate.py::TestDerivative::test_dtype[numpy-float16-0.65--1] FAILED scipy/differentiate/tests/test_differentiate.py::TestDerivative::test_dtype[numpy-float16-x1--1] FAILED scipy/differentiate/tests/test_differentiate.py::TestDerivative::test_dtype[numpy-float16-x1-1] https://docs.python.org/3.15/whatsnew/3.15.html For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.15/fedora-rawhide-x86_64/09929862-scipy/ For all our attempts to build scipy with Python 3.15, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.15/package/scipy/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.15: https://copr.fedorainfracloud.org/coprs/g/python/python3.15/ Let us know here if you have any questions. Python 3.15 is planned to be included in Fedora 45. To make that update smoother, we're building Fedora packages with all pre-releases of Python 3.15. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.