Bug 469392

Yeah this is unfortunate. 

If you can collect all the necessary changes of 
from numpy.testing import NumpyTest 
to
from numpy.testing import Tester 

into a patch that I can apply I'd very much welcome it. I'm not sure I can get to this until Sunday at the earliest if I need to do it on my own.

If you can get me a patch I will spin up an f9 update which includes it.


-jef

I'll see if I can get together a patch.

Thanks,
Matt

Created attachment 322335 [details]
Proposed Patch

I think this is everything. However, I could not figure out how to test this patch using:

  import scipy
  scipy.test(level=1)

from the non-installed copy I used to create the patch. Is that something that would be easy for you to do?

Thanks,
Matt

Created attachment 323967 [details]
Updated patch

This patch now applies via 'patch -p1' from inside the top-level scipy directory. I was able to run the test suite via:

 from scipy import *
 test()

This does yield hundreds (?) of additional 'Obsolete' warnings etc, but does seem to remove the warnings that are the subject of this bug report. It seems that scipy has some significant changes coming in the next release to sync up with numpy again.

Does this look OK?

Thanks,
Matt

scipy-0.7.0-0.1.b1.fc9 has been submitted as an update for Fedora 9.
http://admin.fedoraproject.org/updates/scipy-0.7.0-0.1.b1.fc9

scipy-0.7.0-0.1.b1.fc10 has been submitted as an update for Fedora 10.
http://admin.fedoraproject.org/updates/scipy-0.7.0-0.1.b1.fc10

scipy-0.7.0-0.1.b1.fc9 has been pushed to the Fedora 9 testing repository.  If problems still persist, please make note of it in this bug report.
 If you want to test the update, you can install it with 
 su -c 'yum --enablerepo=updates-testing-newkey update scipy'.  You can provide feedback for this update here: http://admin.fedoraproject.org/updates/F9/FEDORA-2009-0020

scipy-0.7.0-0.1.b1.fc10 has been pushed to the Fedora 10 testing repository.  If problems still persist, please make note of it in this bug report.
 If you want to test the update, you can install it with 
 su -c 'yum --enablerepo=updates-testing update scipy'.  You can provide feedback for this update here: http://admin.fedoraproject.org/updates/F10/FEDORA-2009-0211

As I wrote at http://admin.fedoraproject.org/updates/F9/FEDORA-2009-0020
this does fix the depreciation warnings mentioned here.

However, an upstream package is not completely updated for 0.7.0 yet as:

>>from scipy.interpolate.fitpack import splev

gives the warning:

/usr/lib64/python2.5/site-packages/scipy/sparse/linalg/dsolve/linsolve.py:20: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, install scikits.umfpack instead
  ' install scikits.umfpack instead', DeprecationWarning )


Thanks! I'll bring this up to the SciPy developers.

There is a fix in SciPy trunk that evidently resolves the issue in #9, but it did not make it into the beta. So this should be fixed with the release version.

I think we can close this?

Thanks!
Matt

If you can point me to the patch to fix it, I can re-roll an test update.

-jef

I think it was fixed in trunk rev 5214. Not sure about a patch per-se.

Thanks,
 - Matt

scipy-0.7.0-0.1.b1.fc9 has been pushed to the Fedora 9 stable repository.  If problems still persist, please make note of it in this bug report.

scipy-0.7.0-0.1.b1.fc10 has been pushed to the Fedora 10 stable repository.  If problems still persist, please make note of it in this bug report.