Bug 955306

Summary:	rpy cannot be installed in f18
Product:	[Fedora] Fedora	Reporter:	Paulo Andrade <paulo.cesar.pereira.de.andrade>
Component:	rpy	Assignee:	José Matos <jamatos>
Status:	CLOSED DEFERRED	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	18	CC:	alex, jamatos
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:		Doc Type:	Bug Fix
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2013-04-23 19:29:27 UTC	Type:	Bug
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:

Description Paulo Andrade 2013-04-22 18:30:52 UTC

The problem appears to be very recent as I did not
have it a few weeks ago when generating a mock
chroot:

DEBUG util.py:264:  Error: Package: rpy-2.3.0-0.1.beta1.fc18.x86_64 (build)
DEBUG util.py:264:             Requires: R-core = 2.15.2
DEBUG util.py:264:             Available: R-core-3.0.0-2.fc18.x86_64 (build)
DEBUG util.py:264:                 R-core = 3.0.0-2.fc18
DEBUG util.py:264:  Error: Package: rpy-2.3.0-0.1.beta1.fc18.x86_64 (build)
DEBUG util.py:264:             Requires: R-core = 2.15.2
DEBUG util.py:264:             Installing: R-core-3.0.0-2.fc18.x86_64 (build)
DEBUG util.py:264:                 R-core = 3.0.0-2.fc18
DEBUG util.py:264:   You could try using --skip-broken to work around the problem
DEBUG util.py:264:   You could try running: rpm -Va --nofiles --nodigest

Comment 1 José Matos 2013-04-23 09:43:55 UTC

This should be a transient problem as rpy is already built for F18

https://koji.fedoraproject.org/koji/buildinfo?buildID=413145

and it has been submitted to testing as

https://admin.fedoraproject.org/updates/R-RM2-0.0-12.fc18,R-bigmemory-4.2.11-6.fc18,R-nws-1.7.0.1-7.fc18,R-ALL-1.4.14-1.fc18,R-GenomicFeatures-1.12.0-1.fc18,R-BufferedMatrixMethods-1.24.0-1.fc18,R-ROC-1.36.0-1.fc18,R-affydata-1.11.18-1.fc18,R-biglm-0.8-5.fc18,R-fibroEset-1.4.9-1.fc18,R-rtracklayer-1.20.0-1.fc18,R-BSgenome.Celegans.UCSC.ce2-1.3.19-3.fc18,R-hgu95av2probe-2.12.0-1.fc18,R-maanova-1.30.0-1.fc18,R-hgu133acdf-2.12.0-1.fc18,R-hgu95av2cdf-2.12.0-1.fc18,R-affy-1.38.0-1.fc18,R-RODBC-1.3.6-1.fc18,R-qvalue-1.34.0-1.fc18,R-Rsamtools-1.12.0-1.fc18,R-BSgenome-1.28.0-1.fc18,R-BufferedMatrix-1.24.0-1.fc18,R-multtest-2.16.0-1.fc18,R-biomaRt-2.16.0-1.fc18,R-AnnotationDbi-1.22.1-1.fc18,R-Biostrings-2.28.0-1.fc18,R-affyio-1.28.0-1.fc18,R-RCurl-1.95.4.1-1.fc18,R-preprocessCore-1.22.0-1.fc18,R-Biobase-2.20.0-1.fc18,R-RSQLite-0.11.2-1.fc18,R-caTools-1.14-3.fc18,R-sandwich-2.2.10-1.fc18,R-GenomicRanges-1.12.1-1.fc18,R-tkWidgets-1.38.0-1.fc18,R-msm-1.1.4-1.fc18,R-lmtest-0.9.30-1.fc18,R-widgetTools-1.38.0-1.fc18,R-XML-3.96.1.1-1.fc18,R-IRanges-1.18.0-2.fc18.1,R-mvtnorm-0.9.9994-1.fc18,R-timeDate-2160.97-1.fc18,R-abind-1.4.0-5.fc18,R-DBI-0.2.5-7.fc18,R-Rcompression-0.93.2-8.fc18,R-bitops-1.0.5-1.fc18,R-BiocGenerics-0.6.0-1.fc18,R-zoo-1.7.9-1.fc18,R-DynDoc-1.38.0-1.fc18,R-car-2.0.16-1.fc18,R-rlecuyer-0.3.3-5.fc18,R-RUnit-0.4.26-7.fc18,R-Rsolid-0.9.31-9.fc18,R-acepack-1.3.3.2-1.fc18,rkward-0.6.1-1.fc18,rpy-2.3.5-1.fc18,samtools-0.1.19-1.fc18,R-3.0.0-2.fc18?_csrf_token=4862622a778c65c9a366946a35035c2cefbb944e

so as you see it is in the same thread with R-3.0.0

So I am a little surprised that you had this problem... :-(

Comment 2 Paulo Andrade 2013-04-23 19:29:27 UTC

Thanks. Maybe I was unlucky, but the failure was
in koji build, maybe I was very unlucky with a small
window of time, but since rpy is optional, I disabled
it temporarily for f18 to get the first sagemath
package built.

I think it is ok to close the bug.

Comment 3 José Matos 2013-05-03 21:09:38 UTC

The update has landed in stable so you should be able to use rpy2 in F18 without any problem.