Bug 1011264 - please update to bwa 0.7.5a
Summary: please update to bwa 0.7.5a
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: bwa
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Adam Huffman
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2013-09-24 00:01 UTC by Alex Lancaster
Modified: 2013-11-10 06:47 UTC (History)
1 user (show)

Fixed In Version: bwa-0.7.5a-2.fc20
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2013-11-06 07:36:51 UTC
Type: Bug


Attachments (Terms of Use)

Description Alex Lancaster 2013-09-24 00:01:57 UTC
0.6.x is getting a bit long in the tooth and does not have the "bwa mem" feature, please update to the latest:

http://sourceforge.net/projects/bio-bwa/

Comment 1 Adam Huffman 2013-10-04 16:31:27 UTC
I hope to look at updating it this weekend. Thanks for the notification.

Comment 2 Fedora Update System 2013-10-27 23:04:55 UTC
bwa-0.7.5a-2.fc20 has been submitted as an update for Fedora 20.
https://admin.fedoraproject.org/updates/bwa-0.7.5a-2.fc20

Comment 3 Fedora Update System 2013-10-27 23:10:57 UTC
bwa-0.7.5a-2.fc19 has been submitted as an update for Fedora 19.
https://admin.fedoraproject.org/updates/bwa-0.7.5a-2.fc19

Comment 4 Adam Huffman 2013-10-28 07:54:28 UTC
As noted in the update, 0.7.x requires SSE2, so it won't be available for other architectures. Please test this new build.

Also, this makes updating the EPEL branches rather problematic. Are you using those?

Comment 5 Fedora Update System 2013-10-28 19:21:09 UTC
Package bwa-0.7.5a-2.fc20:
* should fix your issue,
* was pushed to the Fedora 20 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing bwa-0.7.5a-2.fc20'
as soon as you are able to.
Please go to the following url:
https://admin.fedoraproject.org/updates/FEDORA-2013-20142/bwa-0.7.5a-2.fc20
then log in and leave karma (feedback).

Comment 6 Fedora Update System 2013-11-06 07:36:51 UTC
bwa-0.7.5a-2.fc19 has been pushed to the Fedora 19 stable repository.  If problems still persist, please make note of it in this bug report.

Comment 7 Fedora Update System 2013-11-10 06:47:56 UTC
bwa-0.7.5a-2.fc20 has been pushed to the Fedora 20 stable repository.  If problems still persist, please make note of it in this bug report.


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