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please update devtoolset-4-eclipse-egit at least to 4.2 since according this bug https://bugs.eclipse.org/bugs/show_bug.cgi?id=484498 it will handle symlink properly.
4.2 is not yet released but if release time doesn't align well we will consider backporting the patch.
it'd be very useful to backport this patch since it's close a lots of other bugs too (some of them are a years old): https://bugs.eclipse.org/bugs/show_bug.cgi?id=405326 https://bugs.eclipse.org/bugs/show_bug.cgi?id=429304 https://bugs.eclipse.org/bugs/show_bug.cgi?id=484494
4.2 just released which fix the problem.
verified in the second DTS 4.1 alpha hand-off
Since the problem described in this bug report should be resolved in a recent advisory, it has been closed with a resolution of ERRATA. For information on the advisory, and where to find the updated files, follow the link below. If the solution does not work for you, open a new bug report. https://access.redhat.com/errata/RHEA-2016:1145