Bug 1314091 - Package hdf5-mpich-devel does not require package mpich-devel
Summary: Package hdf5-mpich-devel does not require package mpich-devel
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: hdf5
Version: 22
Hardware: x86_64
OS: Linux
unspecified
low
Target Milestone: ---
Assignee: Orion Poplawski
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2016-03-02 22:03 UTC by Matthew Krupcale
Modified: 2016-03-25 01:27 UTC (History)
2 users (show)

Fixed In Version: hdf5-1.8.15-10.patch1.fc23
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2016-03-25 01:27:09 UTC
Type: Bug


Attachments (Terms of Use)
test.c (31 bytes, text/plain)
2016-03-02 22:03 UTC, Matthew Krupcale
no flags Details

Description Matthew Krupcale 2016-03-02 22:03:52 UTC
Created attachment 1132552 [details]
test.c

Description of problem:

Package hdf5-mpich-devel currently requires only hdf5-mpich (which in turn requires mpich) and does not require mpich-devel. Then when compiling software which uses hdf5-mpich-devel, linking against libmpi (i.e. -lmpi) fails because package mpich provides the versioned libraries (i.e. libmpi.so.12), but mpich-devel provides the symbolic link (i.e. libmpi.so) needed for linking.

How reproducible:
Always

Steps to Reproduce:
1. Without package mpich-devel installed, install hdf5-mpich-devel and its dependences.
2. [Matthew@strider ~]$ module load mpi/mpich-x86_64
3. Try to compile a program e.g. test.c:
   [Matthew@strider ~]$ mpicc -o test.exe test.c

Actual results:

/usr/bin/ld: cannot find -lmpi
collect2: error: ld returned 1 exit status

Expected results:

[Matthew@strider ~]$ mpicc -o test.out test.c
produces binary test.out

Additional info:

Installing package mpich-devel fixes this. The hdf5-openmpi-devel package correctly requires openmpi-devel, so this packaging issue is not an issue for for the OpenMPI implementation:

diff <(dnf repoquery --requires hdf5-openmpi-devel) <(dnf repoquery --requires hdf5-mpich-devel)
1c1,2
< Last metadata expiration check performed 4:43:57 ago on Wed Mar  2 10:22:04 2016.
---
> Waiting for process with pid 27750 to finish.
> Last metadata expiration check performed 4:43:59 ago on Wed Mar  2 10:22:04 2016.
3,4c4,5
< hdf5-openmpi(x86-32) = 1.8.14-3.fc22
< hdf5-openmpi(x86-64) = 1.8.14-3.fc22
---
> hdf5-mpich(x86-32) = 1.8.14-3.fc22
> hdf5-mpich(x86-64) = 1.8.14-3.fc22
13c14
< openmpi-devel
---
> mpich

Comment 1 Fedora Update System 2016-03-03 15:26:36 UTC
hdf5-1.8.15-10.patch1.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2016-6a13ebb6ca

Comment 2 Fedora Update System 2016-03-03 21:57:32 UTC
hdf5-1.8.15-10.patch1.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2016-6a13ebb6ca

Comment 3 Fedora Update System 2016-03-25 01:27:07 UTC
hdf5-1.8.15-10.patch1.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report.


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