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Description of problem: X Server crashed during dnf update. Now if I try to run dnf update I can't get over some transaction check error. $ LC_ALL=C dnf update Last metadata expiration check: 1:15:30 ago on Thu Dec 1 09:03:16 2016. Dependencies resolved. ===================================================================================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================================================================================== Upgrading: glib2 i686 2.50.2-1.fc25 updates 2.3 M gsm i686 1.0.16-1.fc25 updates 34 k gtk3 i686 3.22.4-1.fc25 updates 4.3 M libselinux i686 2.5-13.fc25 updates 165 k Transaction Summary ===================================================================================================================================================================================================== Upgrade 4 Packages Total size: 6.9 M Is this ok [y/N]: y Downloading Packages: [SKIPPED] glib2-2.50.2-1.fc25.i686.rpm: Already downloaded [SKIPPED] gsm-1.0.16-1.fc25.i686.rpm: Already downloaded [SKIPPED] gtk3-3.22.4-1.fc25.i686.rpm: Already downloaded [SKIPPED] libselinux-2.5-13.fc25.i686.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test The downloaded packages were saved in cache until the next successful transaction. You can remove cached packages by executing 'dnf clean packages'. Error: Transaction check error: file /usr/share/doc/glib2/NEWS from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/glib2/README from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/de/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/gl/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/lt/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/nb/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/oc/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sk/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gapplication.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gdbus.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio-querymodules.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/glib-compile-schemas.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gsettings.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gtk3/README from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/nl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gsm/ChangeLog from install of gsm-1.0.16-1.fc25.i686 conflicts with file from package gsm-1.0.13-14.fc24.x86_64 Error Summary ------------- Even if I remove all it still does not work: $LC_ALL=C dnf clean all 39 files removed $ LC_ALL=C dnf update RPM Fusion for Fedora 25 - Free - Updates 564 kB/s | 78 kB 00:00 RPM Fusion for Fedora 25 - Free 4.8 MB/s | 515 kB 00:00 Fedora 25 - x86_64 4.1 MB/s | 50 MB 00:12 Fedora 25 - x86_64 - Updates 4.4 MB/s | 6.0 MB 00:01 Last metadata expiration check: 0:00:03 ago on Thu Dec 1 10:24:00 2016. Dependencies resolved. ===================================================================================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================================================================================== Upgrading: glib2 i686 2.50.2-1.fc25 updates 2.3 M gsm i686 1.0.16-1.fc25 updates 34 k gtk3 i686 3.22.4-1.fc25 updates 4.3 M libselinux i686 2.5-13.fc25 updates 165 k Transaction Summary ===================================================================================================================================================================================================== Upgrade 4 Packages Total download size: 6.9 M Is this ok [y/N]: y Downloading Packages: (1/4): gsm-1.0.16-1.fc25.i686.rpm 609 kB/s | 34 kB 00:00 (2/4): glib2-2.50.1-1.fc25_2.50.2-1.fc25.i686.drpm 1.8 MB/s | 198 kB 00:00 (3/4): libselinux-2.5-13.fc25.i686.rpm 2.1 MB/s | 165 kB 00:00 /usr/share/doc/glib2/NEWS: No such file or directory 72% [========================================================- ] 2.1 MB/s | 663 kB 00:00 ETA cannot reconstruct rpm from disk files (4/4): gtk3-3.22.2-2.fc25_3.22.4-1.fc25.i686.drpm 2.7 MB/s | 513 kB 00:00 /usr/share/locale/cs/LC_MESSAGES/gtk30.mo: read error (tried to read 2610 bytes from offset 87144) cannot reconstruct rpm from disk files glib2-2.50.2-1.fc25.i686: Delta RPM rebuild failed gtk3-3.22.4-1.fc25.i686: Delta RPM rebuild failed (1/2): glib2-2.50.2-1.fc25.i686.rpm 3.1 MB/s | 2.3 MB 00:00 (2/2): gtk3-3.22.4-1.fc25.i686.rpm 2.8 MB/s | 4.3 MB 00:01 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Total 1.6 MB/s | 7.6 MB 00:04 Delta RPMs reduced 6.9 MB of updates to 7.6 MB (-10.1% saved) Running transaction check Transaction check succeeded. Running transaction test The downloaded packages were saved in cache until the next successful transaction. You can remove cached packages by executing 'dnf clean packages'. Error: Transaction check error: file /usr/share/doc/glib2/NEWS from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/glib2/README from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/de/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/gl/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/lt/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/nb/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/oc/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sk/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gapplication.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gdbus.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio-querymodules.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/glib-compile-schemas.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gsettings.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gtk3/README from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/nl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gsm/ChangeLog from install of gsm-1.0.16-1.fc25.i686 conflicts with file from package gsm-1.0.13-14.fc24.x86_64 Error Summary -------------
please do distro-sync before doing update. versions of 32bit and 64bit packages are different and files which they share are different.
(In reply to Igor Gnatenko from comment #1) > please do distro-sync before doing update. versions of 32bit and 64bit > packages are different and files which they share are different. I've updated to Fedora 25 from Fedora 24 the day it was released via dnf system-upgrade. distro-sync also didn't help: $ LC_ALL=C sudo dnf distro-sync --allowerasing Last metadata expiration check: 0:39:22 ago on Thu Dec 1 10:24:00 2016. Dependencies resolved. ============================================================================================================================================================================================================================================================================================================================= Package Arch Version Repository Size ============================================================================================================================================================================================================================================================================================================================= Upgrading: glib2 i686 2.50.2-1.fc25 updates 2.3 M gsm i686 1.0.16-1.fc25 updates 34 k gtk3 i686 3.22.4-1.fc25 updates 4.3 M libselinux i686 2.5-13.fc25 updates 165 k Removing: container-selinux x86_64 2:1.12.3-9.git47e22f2.fc25 @updates 29 k docker x86_64 2:1.12.3-9.git47e22f2.fc25 @updates 60 M docker-common x86_64 2:1.12.3-9.git47e22f2.fc25 @updates 2.4 k firefox x86_64 50.0-1.fc25 @@commandline 137 M gnome-boxes x86_64 3.22.2-1.fc25 @@commandline 5.0 M ibus-typing-booster noarch 1.5.10-1.fc25 @@commandline 11 M kernel-headers x86_64 4.8.8-300.fc25 @@commandline 3.7 M python2-rpm x86_64 4.13.0-4.fc25 @updates 182 k python3-rpm x86_64 4.13.0-4.fc25 @updates 190 k rpm x86_64 4.13.0-4.fc25 @updates 1.9 M rpm-build x86_64 4.13.0-4.fc25 @updates 274 k rpm-build-libs x86_64 4.13.0-4.fc25 @updates 168 k rpm-libs x86_64 4.13.0-4.fc25 @updates 644 k rpm-plugin-selinux x86_64 4.13.0-4.fc25 @updates 11 k rpm-plugin-systemd-inhibit x86_64 4.13.0-4.fc25 @updates 11 k Transaction Summary ============================================================================================================================================================================================================================================================================================================================= Upgrade 4 Packages Remove 15 Packages Total size: 6.9 M Is this ok [y/N]: y Downloading Packages: [SKIPPED] glib2-2.50.2-1.fc25.i686.rpm: Already downloaded [SKIPPED] gsm-1.0.16-1.fc25.i686.rpm: Already downloaded [SKIPPED] gtk3-3.22.4-1.fc25.i686.rpm: Already downloaded [SKIPPED] libselinux-2.5-13.fc25.i686.rpm: Already downloaded Running transaction check Transaction check succeeded. Running transaction test The downloaded packages were saved in cache until the next successful transaction. You can remove cached packages by executing 'dnf clean packages'. Error: Transaction check error: file /usr/share/doc/glib2/NEWS from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/glib2/README from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/de/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/gl/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/lt/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/nb/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/oc/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sk/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/glib20.mo from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gapplication.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gdbus.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio-querymodules.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gio.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/glib-compile-schemas.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/man/man1/gsettings.1.gz from install of glib2-2.50.2-1.fc25.i686 conflicts with file from package glib2-2.50.1-1.fc25.x86_64 file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gtk3/README from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/nl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.4-1.fc25.i686 conflicts with file from package gtk3-3.22.2-2.fc25.x86_64 file /usr/share/doc/gsm/ChangeLog from install of gsm-1.0.16-1.fc25.i686 conflicts with file from package gsm-1.0.13-14.fc24.x86_64 Error Summary -------------