Bug 2056048 - openbabel should not bundle third-party inchi components
Summary: openbabel should not bundle third-party inchi components
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora EPEL
Classification: Fedora
Component: openbabel
Version: epel8
Hardware: Unspecified
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Antonio T. sagitter
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On: 2056195
Blocks:
TreeView+ depends on / blocked
 
Reported: 2022-02-18 15:24 UTC by John Bollinger
Modified: 2022-11-10 22:08 UTC (History)
5 users (show)

Fixed In Version: openbabel-3.1.1-15.fc36 openbabel-3.1.1-15.fc37
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Environment:
Last Closed: 2022-10-09 16:33:28 UTC
Type: Bug
Embargoed:


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Description John Bollinger 2022-02-18 15:24:50 UTC
Description of problem:

Starting with openbabel-3.1.1-4, openbabel bundles the third-party "inchi" library and its development components, but only for EPEL / RHEL builds, not Fedora builds.  It is no more appropriate for the package to perform such bundling in EPEL than it would be for it to do so in Fedora (refer to https://docs.fedoraproject.org/en-US/packaging-guidelines/#bundling).  Instead, Fedora's inchi packages should be introduced into EPEL, and all openbabel builds should rely on those.


Version-Release number of selected component (if applicable):

3.1.1-4 through present latest (3.1.1-6)


How reproducible:

Always.


Steps to Reproduce:

1. Build openbabel packages on RHEL 8 from the openbabel-3.1.1-4 (or later) source RPM.
2. Query the package contents via (say) "rpm -ql -p openbabel-devel-3.1.1-4.el8.x86_64.rpm"


Actual results:

inchi components /usr/include/inchi/inchi_api.h, /usr/lib64/libinchi.so, and /usr/lib64/libinchi.so.1 are among the openbabel-devel and openbabel-libs contents.


Expected results:

No inchi components should be bundled with openbabel.  (They should instead be provided via separate packages.)


Additional info:

The inchi version presently bundled with the latest EPEL openbabel package is stale (version 1.0.4 is bundled, whereas 1.0.5 was released in January 2017 and latest is 1.0.6).

The Inchi standard and software distribution are under different institutional control from openbabel, so there is no ambiguity about inchi being a third-party library relative to openbabel.

Comment 1 Susi Lehtola 2022-02-23 02:53:02 UTC
openbabel is a core RHEL package.

Comment 2 Susi Lehtola 2022-02-23 03:00:14 UTC
Sorry, I was thinking openblas. :D

Comment 3 Fedora Update System 2022-10-01 10:42:05 UTC
FEDORA-2022-608aa85d22 has been submitted as an update to Fedora 37. https://bodhi.fedoraproject.org/updates/FEDORA-2022-608aa85d22

Comment 4 Fedora Update System 2022-10-01 10:42:06 UTC
FEDORA-2022-30f18333d1 has been submitted as an update to Fedora 36. https://bodhi.fedoraproject.org/updates/FEDORA-2022-30f18333d1

Comment 5 Fedora Update System 2022-10-02 01:22:44 UTC
FEDORA-2022-608aa85d22 has been pushed to the Fedora 37 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2022-608aa85d22`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-608aa85d22

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 6 Fedora Update System 2022-10-02 02:18:19 UTC
FEDORA-2022-30f18333d1 has been pushed to the Fedora 36 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2022-30f18333d1`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2022-30f18333d1

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 7 Fedora Update System 2022-10-09 16:33:28 UTC
FEDORA-2022-30f18333d1 has been pushed to the Fedora 36 stable repository.
If problem still persists, please make note of it in this bug report.

Comment 8 Fedora Update System 2022-11-10 22:08:47 UTC
FEDORA-2022-608aa85d22 has been pushed to the Fedora 37 stable repository.
If problem still persists, please make note of it in this bug report.


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