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I just created a new user, assigned it to the All Resources role. Saved. I then went over to the role UI and created a role called "Provisioning" and just enabled the global "bundle" permission to it. As part of me creating that role (I didn't save it yet), I assigned the new role to my user I created earlier. I then hit save to save the role. I then went back to look at the user, and the "All resources" role was missing, all he had was the new Provisioning role.
Fixed in master (commit 6cd53e7).
Verified against RHQ 4.0.0-SNAPSHOT build# f896da0. 1. Created new user and assigned All Resource Role. 2. Went over to Role UI and created new role called Provisioning (did not hit save yet), assigned this new role to the newly created user in 1 and then hit the save button. 3. Went back to User UI and then looked at the newly created user's role. I could see both the roles assigned to the user. Marking this bug as verified.
Bookkeeping - closing bug - fixed in recent release.