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abrt version: 2.0.3 architecture: x86_64 cmdline: component: yum executable: /usr/bin/yum kernel: 2.6.38.8-32.fc15.x86_64 os_release: Fedora release 15 (Lovelock) package: yum-3.2.29-6.fc15 reason: misc.py:943:stat_f:OSError: [Errno 13] Permission denied: '/var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo' time: Wed Jul 6 16:54:08 2011 uid: 13013 username: pdestefa backtrace: :misc.py:943:stat_f:OSError: [Errno 13] Permission denied: '/var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo' : :Traceback (most recent call last): : File "/usr/bin/yum", line 29, in <module> : yummain.user_main(sys.argv[1:], exit_code=True) : File "/usr/share/yum-cli/yummain.py", line 267, in user_main : errcode = main(args) : File "/usr/share/yum-cli/yummain.py", line 120, in main : result, resultmsgs = base.doCommands() : File "/usr/share/yum-cli/cli.py", line 432, in doCommands : return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds) : File "/usr/share/yum-cli/yumcommands.py", line 341, in doCommand : '=' : clir, 'not in' : clie}) : File "/usr/share/yum-cli/output.py", line 671, in listPkgs : self.infoOutput(pkg, highlight=highlight) : File "/usr/share/yum-cli/output.py", line 589, in infoOutput : if pkg.repoid == 'installed' and 'from_repo' in pkg.yumdb_info: : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1833, in __contains__ : x = self.get(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1863, in get : res = self._read(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1780, in _read : info = misc.stat_f(fn) : File "/usr/lib/python2.7/site-packages/yum/misc.py", line 943, in stat_f : return os.stat(filename) :OSError: [Errno 13] Permission denied: '/var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo' : :Local variables in innermost frame: :e: OSError(13, 'Permission denied') :filename: '/var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo' comment: :yum erase of a single leave with a single dependancy :did not remove the non-leaf package as expected. So I tried :to get information about the remove-with-leaves plugin using: : : yum info yum-plugin-remove-with-leaves : :This command produces this error: : :Loaded plugins: changelog, langpacks, presto, refresh-packagekit, remove-with-leaves, show-leaves :Installed Packages :Name : yum-plugin-remove-with-leaves :Arch : noarch :Version : 1.1.30 :Release : 2.fc15 :Size : 26 k :Repo : installed :Traceback (most recent call last): : File "/usr/bin/yum", line 29, in <module> : yummain.user_main(sys.argv[1:], exit_code=True) : File "/usr/share/yum-cli/yummain.py", line 267, in user_main : errcode = main(args) : File "/usr/share/yum-cli/yummain.py", line 120, in main : result, resultmsgs = base.doCommands() : File "/usr/share/yum-cli/cli.py", line 432, in doCommands : return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds) : File "/usr/share/yum-cli/yumcommands.py", line 341, in doCommand : '=' : clir, 'not in' : clie}) : File "/usr/share/yum-cli/output.py", line 671, in listPkgs : self.infoOutput(pkg, highlight=highlight) : File "/usr/share/yum-cli/output.py", line 589, in infoOutput : if pkg.repoid == 'installed' and 'from_repo' in pkg.yumdb_info: : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1833, in __contains__ : x = self.get(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1863, in get : res = self._read(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1780, in _read : info = misc.stat_f(fn) : File "/usr/lib/python2.7/site-packages/yum/misc.py", line 943, in stat_f : return os.stat(filename) :OSError: [Errno 13] Permission denied: '/var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo' : :Now, ALL yum info commands for installed packages crash yum : :yum info installed |grep leaves : : leaves, show-leaves :Traceback (most recent call last): : File "/usr/bin/yum", line 29, in <module> : yummain.user_main(sys.argv[1:], exit_code=True) : File "/usr/share/yum-cli/yummain.py", line 267, in user_main : errcode = main(args) : File "/usr/share/yum-cli/yummain.py", line 120, in main : result, resultmsgs = base.doCommands() : File "/usr/share/yum-cli/cli.py", line 432, in doCommands : return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds) : File "/usr/share/yum-cli/yumcommands.py", line 341, in doCommand : '=' : clir, 'not in' : clie}) : File "/usr/share/yum-cli/output.py", line 671, in listPkgs : self.infoOutput(pkg, highlight=highlight) : File "/usr/share/yum-cli/output.py", line 589, in infoOutput : if pkg.repoid == 'installed' and 'from_repo' in pkg.yumdb_info: : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1833, in __contains__ : x = self.get(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1863, in get : res = self._read(attr) : File "/usr/lib/python2.7/site-packages/yum/rpmsack.py", line 1780, in _read : info = misc.stat_f(fn) : File "/usr/lib/python2.7/site-packages/yum/misc.py", line 943, in stat_f : return os.stat(filename) :OSError: [Errno 13] Permission denied: '/var/lib/yum/yumdb/G/7f38cd79a6b04cdcedc50377033720762098a99c-GraphicsMagick-1.3.12-4.fc15-x86_64/from_repo' : : :running as root produces no error
*** Bug 719044 has been marked as a duplicate of this bug. ***
Can either of you give me a "ls -ld" on the filename, and all preceeding paths? Eg. using /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo as an example: ls -ld /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo ls -ld /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch ls -ld /var/lib/yum/yumdb/y ls -ld /var/lib/yum/yumdb ls -ld /var/lib/yum ls -ld /var/lib ls -ld /var
I think this is what you wanted: [root@raptor /]# ls -ld /var/lib/yum/yumdb/x/4b4b0ba029e841511ccfc325d93171af4dc488c0-xorg-x11-xkb-extras-7.5-3.fc15-x86_64/from_repo -rw-------. 1 root root 6 Jul 5 10:07 /var/lib/yum/yumdb/x/4b4b0ba029e841511ccfc325d93171af4dc488c0-xorg-x11-xkb-extras-7.5-3.fc15-x86_64/from_repo [root@raptor /]# ls -ld /var/lib/yum/yumdb/x/4b4b0ba029e841511ccfc325d93171af4dc488c0-xorg-x11-xkb-extras-7.5-3.fc15-x86_64/ drwx------. 2 root root 4096 Jul 5 10:07 /var/lib/yum/yumdb/x/4b4b0ba029e841511ccfc325d93171af4dc488c0-xorg-x11-xkb-extras-7.5-3.fc15-x86_64/ [root@raptor /]# ls -ld /var/lib/yum/yumd^C [root@raptor /]# ls -ld /var/lib/yum/yumdb/x/ drwxr-xr-x. 92 root root 16384 Jul 5 10:07 /var/lib/yum/yumdb/x/ [root@raptor /]# ls -ld /var/lib/yum/yumdb/ drwxr-xr-x. 36 root root 4096 May 26 17:29 /var/lib/yum/yumdb/ [root@raptor /]# ls -ld /var/lib/yum/ drwxr-xr-x. 6 root root 4096 Jul 5 10:07 /var/lib/yum/ [root@raptor /]# ls -ld /var/lib/ drwxr-xr-x. 45 root root 4096 Jun 28 08:50 /var/lib/ [root@raptor /]# ls -ld /var/ drwxr-xr-x. 18 root root 4096 May 26 17:25 /var/ [root@raptor /]# ls -ld / dr-xr-xr-x. 24 root root 4096 Jul 6 15:08 /
Sure: > ls -ld /var drwxr-xr-x. 19 root root 4096 Jun 26 01:49 /var/ > ls -ld /var/lib drwxr-xr-x. 42 root root 4096 Jul 1 13:15 /var/lib/ > ls -ld /var/lib/yum drwxr-xr-x. 6 root root 4096 Jul 6 16:52 /var/lib/yum/ > ls -ld /var/lib/yum/yumdb drwxrwxr-x. 37 root root 4096 Jul 6 16:21 /var/lib/yum/yumdb/ > ls -ld /var/lib/yum/yumdb/y drwxrwxr-x. 15 root root 4096 Jun 29 22:03 /var/lib/yum/yumdb/y/ > ls -ld /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch drwx------. 2 root root 4096 Jun 26 15:51 /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/ > ls -ld /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo ls: cannot access /var/lib/yum/yumdb/y/d449ffdd4a874c7c398ceb52023d6718aa1876ad-yum-plugin-remove-with-leaves-1.1.30-2.fc15-noarch/from_repo: Permission denied Thanks for your help. I have a couple theories, but nothing fits perfectly.
Ok, so it's just the last directories ... can you run the "umask" command, and tell me what it says ... or tell me if you know you do anything to that as root?
All of my umasks are 077. I don't believe I've done anything as root to those directories in particular.
:-) Yep, same here. Well, *my normal user* umask is 077. I use sudo, so when I run 'sudo yum install ...' it runs with umask 077. But, it only fits if yum doesn't control permissions on it's database, which would be unexpected. This isn't a problem with RPM is it? If it is--if rpm also does not control it's database permissions--then we have an even bigger problem.
Yeh, I just wanted to make sure that this was another umask bug ... and not something else. I've changed yum upstream to reset umask on mkdir() as well as open(), when it's creating yumdb stuff. rpm should have fixed any umask problems long ago ... but then it doesn't really go creating new files much, so it's somewhat easier :).
Awesome! Many thanks! Is it safe to assume the correct permissions are 775 for directories and 664 for files under yumdb/ ?
Yeh, those should work. Although we change the umask to 022, so you get 755 and 644.
Got it. Thanks.
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