Bug 726998 - bioperl 1.6.9 is available [NEEDINFO]
Summary: bioperl 1.6.9 is available
Alias: None
Product: Fedora
Classification: Fedora
Component: perl-bioperl
Version: 19
Hardware: Unspecified
OS: Unspecified
Target Milestone: ---
Assignee: Alex Lancaster
QA Contact: Fedora Extras Quality Assurance
Depends On:
TreeView+ depends on / blocked
Reported: 2011-07-31 22:16 UTC by Jack Tanner
Modified: 2015-02-18 13:36 UTC (History)
2 users (show)

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Last Closed: 2015-02-18 13:36:16 UTC
Type: ---
alex: needinfo? (ihok)

Attachments (Terms of Use)
BioPerl paths patch, updated for 1.6.901 (6.72 KB, patch)
2011-08-02 15:35 UTC, Jack Tanner
no flags Details | Diff
New paths patch for BioPerl-Run (3.95 KB, patch)
2011-08-02 15:35 UTC, Jack Tanner
no flags Details | Diff
BioPerl spec, updated for 1.6.901 (4.47 KB, text/plain)
2011-08-02 15:42 UTC, Jack Tanner
no flags Details
BioPerl-Run spec, updated for 1.006900 (2.50 KB, text/plain)
2011-08-02 15:43 UTC, Jack Tanner
no flags Details

Description Jack Tanner 2011-07-31 22:16:54 UTC
Rawhide is on perl-bioperl-1.6.1, but 1.6.9 is now available.

Comment 1 Jack Tanner 2011-08-02 15:35:00 UTC
Created attachment 516343 [details]
BioPerl paths patch, updated for 1.6.901

Comment 2 Jack Tanner 2011-08-02 15:35:40 UTC
Created attachment 516346 [details]
New paths patch for BioPerl-Run

Comment 3 Jack Tanner 2011-08-02 15:42:37 UTC
Created attachment 516350 [details]
BioPerl spec, updated for 1.6.901

Comment 4 Jack Tanner 2011-08-02 15:43:20 UTC
Created attachment 516351 [details]
BioPerl-Run spec, updated for 1.006900

Comment 5 Jack Tanner 2011-08-02 15:47:25 UTC
The above specs and patches allow BioPerl 1.6.901 and BioPerl-Run 1.006900, latest as of today, to build and install on RHEL 6.

The specs are crude and will require much further linting, but it took me a while to even get this far, so perhaps this will be a useful starting point.

Note that the BioPerl-Run version number underwent a change of format, and is now less than the number of the previous version.

Comment 6 Jack Tanner 2011-08-02 15:50:28 UTC
Also, Bio::Phylo was required for this update; the basic spec generated by cpanspec worked for that.

Comment 7 Alex Lancaster 2011-08-09 08:13:44 UTC
Thanks for the patches.  I'll look into applying them and updating as soon as I get a chance.

Comment 8 Fedora End Of Life 2013-04-03 19:12:52 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 19 development cycle.
Changing version to '19'.

(As we did not run this process for some time, it could affect also pre-Fedora 19 development
cycle bugs. We are very sorry. It will help us with cleanup during Fedora 19 End Of Life. Thank you.)

More information and reason for this action is here:

Comment 9 Alex Lancaster 2013-04-07 21:09:31 UTC
I have actually orphaned the package back in 2012 because I don't use it as much anymore: 


but I had volunteered to stay on as a co-maintainer.  Unfortunately nobody stepped up and they were removed in March 2013.  I'm willing to reenable them if I can get some help maintaining them.

Comment 10 Fedora End Of Life 2015-01-09 21:51:39 UTC
This message is a notice that Fedora 19 is now at end of life. Fedora 
has stopped maintaining and issuing updates for Fedora 19. It is 
Fedora's policy to close all bug reports from releases that are no 
longer maintained. Approximately 4 (four) weeks from now this bug will
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Comment 11 Fedora End Of Life 2015-02-18 13:36:16 UTC
Fedora 19 changed to end-of-life (EOL) status on 2015-01-06. Fedora 19 is
no longer maintained, which means that it will not receive any further
security or bug fix updates. As a result we are closing this bug.

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