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Description of problem: after installing grace with yum I have the error: xmgrace: error while loading shared libraries: libhdf5_hl.so.6: cannot open shared object file: No such file or directory Version-Release number of selected component (if applicable): grace-5.1.22-7.el6.x86_64 Steps to Reproduce: 1. # yum install grace Loaded plugins: fastestmirror, refresh-packagekit Loading mirror speeds from cached hostfile * base: mirror.in2p3.fr * elrepo: mirrors.coreix.net * epel: fr2.rpmfind.net * extras: mirror.in2p3.fr * rpmforge: fr2.rpmfind.net * updates: mirror.in2p3.fr Setting up Install Process Resolving Dependencies --> Running transaction check ---> Package grace.x86_64 0:5.1.22-7.el6 will be installed --> Processing Dependency: nedit for package: grace-5.1.22-7.el6.x86_64 --> Processing Dependency: libfftw.so.2()(64bit) for package: grace-5.1.22-7.el6.x86_64 --> Processing Dependency: libXbae.so.4()(64bit) for package: grace-5.1.22-7.el6.x86_64 --> Processing Dependency: libnetcdf.so.6()(64bit) for package: grace-5.1.22-7.el6.x86_64 --> Processing Dependency: libXm.so.4()(64bit) for package: grace-5.1.22-7.el6.x86_64 --> Running transaction check ---> Package fftw2.x86_64 0:2.1.5-21.el6 will be installed ---> Package nedit.x86_64 0:5.5-23.el6 will be installed ---> Package netcdf.x86_64 0:4.1.1-3.el6.2 will be installed ---> Package openmotif.x86_64 0:2.3.3-4.el6 will be installed ---> Package xbae.x86_64 0:4.60.4-12.el6 will be installed --> Finished Dependency Resolution Dependencies Resolved ============================================================================================================================================================================================================================================= Package Arch Version Repository Size ============================================================================================================================================================================================================================================= Installing: grace x86_64 5.1.22-7.el6 epel 1.1 M Installing for dependencies: fftw2 x86_64 2.1.5-21.el6 epel 395 k nedit x86_64 5.5-23.el6 epel 575 k netcdf x86_64 4.1.1-3.el6.2 epel 4.8 M openmotif x86_64 2.3.3-4.el6 cr 1.4 M xbae x86_64 4.60.4-12.el6 epel 139 k Transaction Summary ============================================================================================================================================================================================================================================= Install 6 Package(s) Total download size: 8.3 M Installed size: 26 M Is this ok [y/N]: y Downloading Packages: (1/6): fftw2-2.1.5-21.el6.x86_64.rpm | 395 kB 00:00 (2/6): grace-5.1.22-7.el6.x86_64.rpm | 1.1 MB 00:00 (3/6): nedit-5.5-23.el6.x86_64.rpm | 575 kB 00:00 (4/6): netcdf-4.1.1-3.el6.2.x86_64.rpm | 4.8 MB 00:00 (5/6): openmotif-2.3.3-4.el6.x86_64.rpm | 1.4 MB 00:02 (6/6): xbae-4.60.4-12.el6.x86_64.rpm | 139 kB 00:00 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Total 2.3 MB/s | 8.3 MB 00:03 Running rpm_check_debug Running Transaction Test Transaction Test Succeeded Running Transaction Installing : openmotif-2.3.3-4.el6.x86_64 1/6 Installing : nedit-5.5-23.el6.x86_64 2/6 Installing : xbae-4.60.4-12.el6.x86_64 3/6 Installing : netcdf-4.1.1-3.el6.2.x86_64 4/6 Installing : fftw2-2.1.5-21.el6.x86_64 5/6 Installing : grace-5.1.22-7.el6.x86_64 6/6 Installed: grace.x86_64 0:5.1.22-7.el6 Dependency Installed: fftw2.x86_64 0:2.1.5-21.el6 nedit.x86_64 0:5.5-23.el6 netcdf.x86_64 0:4.1.1-3.el6.2 openmotif.x86_64 0:2.3.3-4.el6 xbae.x86_64 0:4.60.4-12.el6 Complete! 2. $ xmgrace xmgrace: error while loading shared libraries: libhdf5_hl.so.6: cannot open shared object file: No such file or directory Additional info: I tried: # yum install hdf5 and # yum install hdf5-openmpi But I still have the same error. Perhaps is it just a missing dependency?
I really need this (I believe I am not alone). Can someone help?
Please someone reply. This is like loosing the best software for science!
Ok I have found the problem it was a conflict with rpmforge which gives an higher version of hdf5... I will report it to rpmforge as they do not provide enough tools to rebuild grace against there versions (netcdf missing).
The work to convert grace to use hdf5 will be done for rawhide first.
Please try: ( use epel repository! ) ------------------------------- yum erase grace netcdf hdf5* yum install grace you will see following packages will be installed: ------------------------------- hdf5-1.8.5.patch1-7.el6.x86_64 netcdf-4.1.1-3.el6.2.x86_64 grace-5.1.22-7.el6.x86_64