Red Hat Bugzilla – Bug 800317
[abrt] R-core-2.14.1-1.fc16: _IO_vfprintf_internal: Process /usr/lib64/R/bin/exec/R was killed by signal 11 (SIGSEGV)
Last modified: 2013-02-13 18:12:25 EST
libreport version: 2.0.8 abrt_version: 2.0.7 backtrace_rating: 4 cmdline: /usr/lib64/R/bin/exec/R crash_function: _IO_vfprintf_internal executable: /usr/lib64/R/bin/exec/R kernel: 3.2.3-2.fc16.x86_64 pid: 7477 pwd: /home/milan/Cachan/Analyse lexicale reason: Process /usr/lib64/R/bin/exec/R was killed by signal 11 (SIGSEGV) time: lun. 05 mars 2012 16:37:30 CET uid: 1000 username: milan backtrace: Text file, 1545031 bytes dso_list: Text file, 6967 bytes maps: Text file, 37981 bytes var_log_messages: Text file, 12593 bytes comment: :Happens reliably when doing a little mistake: calling :c(object1, object2) :with object1 being a large simple_triplet_matrix, and object2 a small table. environ: :SED=/bin/sed :XDG_VTNR=7 :XDG_SESSION_ID=120 :R_INCLUDE_DIR=/usr/include/R :HOSTNAME=milan :IMSETTINGS_INTEGRATE_DESKTOP=yes :GPG_AGENT_INFO=/tmp/keyring-x9GMlB/gpg:0:1 :SHELL=/bin/bash :TERM=xterm :XDG_SESSION_COOKIE=9e1782da896cc13ddd95ca060000000c-1330776625.485616-797847102 :HISTSIZE=1000 :GJS_DEBUG_OUTPUT=stderr :WINDOWID=37751189 :GNOME_KEYRING_CONTROL=/tmp/keyring-x9GMlB :'GJS_DEBUG_TOPICS=JS ERROR;JS LOG' :IMSETTINGS_MODULE=none :USER=milan :LD_LIBRARY_PATH=/usr/lib64/R/lib:/usr/lib/jvm/jre/lib/amd64/server:/usr/lib/jvm/jre/lib/amd64:/usr/lib/jvm/java/lib/amd64:/usr/java/packages/lib/amd64:/lib:/usr/lib :LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: :SSH_AUTH_SOCK=/tmp/keyring-x9GMlB/ssh :USERNAME=milan :SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/27477,unix/unix:/tmp/.ICE-unix/27477 :DESKTOP_SESSION=gnome :MAIL=/var/spool/mail/milan :PATH=/usr/lib64/ccache:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin :QT_IM_MODULE=xim :'PWD=/home/milan/Cachan/Analyse lexicale' :R_SHARE_DIR=/usr/share/R :XMODIFIERS=@im=none :EDITOR=nano :KDE_IS_PRELINKED=1 :LANG=fr_FR.utf8 :GNOME_KEYRING_PID=27470 :GDM_LANG=fr_FR.utf8 :KDEDIRS=/usr/local:/usr :GDMSESSION=gnome :HISTCONTROL=ignoredups:ignorespace :R_ARCH= :SHLVL=2 :HOME=/home/milan :XDG_SEAT=seat0 :GNOME_DESKTOP_SESSION_ID=this-is-deprecated :LOGNAME=milan :CVS_RSH=ssh :DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-brZuI343BG,guid=7f7c802200849512bc67e43d0005fec2 :'LESSOPEN=||/usr/bin/lesspipe.sh %s' :R_HOME=/usr/lib64/R :WINDOWPATH=7 :DISPLAY=:0 :XDG_RUNTIME_DIR=/run/user/milan :R_DOC_DIR=/usr/share/doc/R-2.14.1 :XAUTHORITY=/var/run/gdm/auth-for-milan-AjXjLf/database :COLORTERM=gnome-terminal :CCACHE_HASHDIR=
Created attachment 567890 [details] File: dso_list
Created attachment 567891 [details] File: maps
Created attachment 567892 [details] File: var_log_messages
Created attachment 567895 [details] File: backtrace
The crash only happens if the slam package is loaded. It seems the crash happens when trying to convert the simple_triplet_matrix to a matrix. *** caught segfault *** address 0x7fff24dc3fc8, cause 'memory not mapped' Traceback: 1: is.matrix(x) 2: as.matrix.default(x) 3: as.matrix(x) 4: as.simple_triplet_matrix(as.matrix(x)) 5: as.simple_triplet_matrix.default(as.matrix(x)) 6: as.simple_triplet_matrix(as.matrix(x)) ... 4420: as.simple_triplet_matrix(as.matrix(x)) 4421: as.simple_triplet_matrix.default(x) 4422: as.simple_triplet_matrix(x) 4423: .TermDocumentMatrix(x, weighting) 4424: as.TermDocumentMatrix.default(X[[2L]], ...) 4425: FUN(X[[2L]], ...) 4426: lapply(base::c(list(x), args), as.TermDocumentMatrix) 4427: do.call("c", lapply(base::c(list(x), args), as.TermDocumentMatrix)) 4428: t(do.call("c", lapply(base::c(list(x), args), as.TermDocumentMatrix))) 4429: c.DocumentTermMatrix(obj1, obj2) 4430: c(obj1, obj2)
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Fedora 16 changed to end-of-life (EOL) status on 2013-02-12. Fedora 16 is no longer maintained, which means that it will not receive any further security or bug fix updates. As a result we are closing this bug. If you can reproduce this bug against a currently maintained version of Fedora please feel free to reopen this bug against that version. Thank you for reporting this bug and we are sorry it could not be fixed.