Bug 2448771 (CVE-2026-31969) - CVE-2026-31969 htslib: HTSlib: CRAM decoder has a heap buffer overflow
Summary: CVE-2026-31969 htslib: HTSlib: CRAM decoder has a heap buffer overflow
Keywords:
Status: NEW
Alias: CVE-2026-31969
Product: Security Response
Classification: Other
Component: vulnerability
Version: unspecified
Hardware: All
OS: Linux
high
high
Target Milestone: ---
Assignee: Product Security DevOps Team
QA Contact:
URL:
Whiteboard:
Depends On: 2448882 2448889 2448886
Blocks:
TreeView+ depends on / blocked
 
Reported: 2026-03-18 20:01 UTC by OSIDB Bzimport
Modified: 2026-03-18 21:38 UTC (History)
0 users

Fixed In Version:
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Description OSIDB Bzimport 2026-03-18 20:01:50 UTC
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods.  When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program.  It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.


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