Bug 2448773 (CVE-2026-31971) - CVE-2026-31971 htslib: HTSlib: CRAM decoder vulnerable to buffer overflow
Summary: CVE-2026-31971 htslib: HTSlib: CRAM decoder vulnerable to buffer overflow
Keywords:
Status: NEW
Alias: CVE-2026-31971
Product: Security Response
Classification: Other
Component: vulnerability
Version: unspecified
Hardware: All
OS: Linux
high
high
Target Milestone: ---
Assignee: Product Security DevOps Team
QA Contact:
URL:
Whiteboard:
Depends On: 2448880 2448888 2448892 2448884
Blocks:
TreeView+ depends on / blocked
 
Reported: 2026-03-18 20:02 UTC by OSIDB Bzimport
Modified: 2026-03-18 21:37 UTC (History)
0 users

Fixed In Version:
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Description OSIDB Bzimport 2026-03-18 20:02:03 UTC
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_LEN` method, the `cram_byte_array_len_decode()` failed to validate that the amount of data being unpacked matched the size of the output buffer where it was to be stored. Depending on the data series being read, this could result either in a heap or a stack overflow with attacker-controlled bytes. Depending on the data stream this could result either in a heap buffer overflow or a stack overflow. If a user opens a file crafted to exploit this issue it could lead to the program crashing, overwriting of data structures on the heap or stack in ways not expected by the program, or changing the control flow of the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.


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