Bug 1280490 (python-pyriemann)
Summary: | Review Request: python-pyriemann - Covariance matrices manipulation and Biosignal classification | ||
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Product: | [Fedora] Fedora | Reporter: | Igor Gnatenko <ignatenko> |
Component: | Package Review | Assignee: | Zbigniew Jędrzejewski-Szmek <zbyszek> |
Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
Severity: | medium | Docs Contact: | |
Priority: | medium | ||
Version: | rawhide | CC: | package-review, zbyszek |
Target Milestone: | --- | Flags: | zbyszek:
fedora-review+
|
Target Release: | --- | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Fixed In Version: | Doc Type: | Bug Fix | |
Doc Text: | Story Points: | --- | |
Clone Of: | Environment: | ||
Last Closed: | 2015-12-09 20:50:59 UTC | Type: | --- |
Regression: | --- | Mount Type: | --- |
Documentation: | --- | CRM: | |
Verified Versions: | Category: | --- | |
oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
Cloudforms Team: | --- | Target Upstream Version: | |
Embargoed: | |||
Bug Depends On: | |||
Bug Blocks: | 1276941 |
Description
Igor Gnatenko
2015-11-11 21:18:22 UTC
Build fails in tests: ====================================================================== ERROR: Test Fit of Kmeans ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/builddir/build/BUILD/python-pyriemann-0.2.3/python2/tests/test_clustering.py", line 20, in test_Kmeans_fit km.fit(covset) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 155, in fit tol=self.tol) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 20, in _fit_single X, n_clusters, init, random_state=random_state) File "/usr/lib64/python2.7/site-packages/sklearn/cluster/k_means_.py", line 620, in _init_centroids x_squared_norms = row_norms(X, squared=True) File "/usr/lib64/python2.7/site-packages/sklearn/utils/extmath.py", line 69, in row_norms norms = np.einsum('ij,ij->i', X, X) ValueError: operand has more dimensions than subscripts given in einstein sum, but no '...' ellipsis provided to broadcast the extra dimensions. ====================================================================== ERROR: Test Fit of Kmeans wit matric initialization ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/builddir/build/BUILD/python-pyriemann-0.2.3/python2/tests/test_clustering.py", line 26, in test_Kmeans_fit_with_init km.fit(covset) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 141, in fit tol=self.tol) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 20, in _fit_single X, n_clusters, init, random_state=random_state) File "/usr/lib64/python2.7/site-packages/sklearn/cluster/k_means_.py", line 620, in _init_centroids x_squared_norms = row_norms(X, squared=True) File "/usr/lib64/python2.7/site-packages/sklearn/utils/extmath.py", line 69, in row_norms norms = np.einsum('ij,ij->i', X, X) ValueError: operand has more dimensions than subscripts given in einstein sum, but no '...' ellipsis provided to broadcast the extra dimensions. ====================================================================== ERROR: Test Fit of Kmeans with a given y ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/builddir/build/BUILD/python-pyriemann-0.2.3/python2/tests/test_clustering.py", line 33, in test_Kmeans_fit_with_y km.fit(covset,y=labels) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 155, in fit tol=self.tol) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 20, in _fit_single X, n_clusters, init, random_state=random_state) File "/usr/lib64/python2.7/site-packages/sklearn/cluster/k_means_.py", line 620, in _init_centroids x_squared_norms = row_norms(X, squared=True) File "/usr/lib64/python2.7/site-packages/sklearn/utils/extmath.py", line 69, in row_norms norms = np.einsum('ij,ij->i', X, X) ValueError: operand has more dimensions than subscripts given in einstein sum, but no '...' ellipsis provided to broadcast the extra dimensions. ====================================================================== ERROR: Test Fit of Kmeans using paralell ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/builddir/build/BUILD/python-pyriemann-0.2.3/python2/tests/test_clustering.py", line 39, in test_Kmeans_fit_parallel km.fit(covset) File "/builddir/build/BUILDROOT/python-pyriemann-0.2.3-2.fc24.x86_64/usr/lib/python2.7/site-packages/pyriemann/clustering.py", line 167, in fit for seed in seeds) File "/usr/lib/python2.7/site-packages/joblib/parallel.py", line 812, in __call__ self.retrieve() File "/usr/lib/python2.7/site-packages/joblib/parallel.py", line 762, in retrieve raise exception JoblibValueError: JoblibValueError ___________________________________________________________________________ This is with current rawhide: DEBUG util.py:393: python-pandas x86_64 0.17.0-3.fc24 fedora 6.5 M DEBUG util.py:393: python-scikit-learn x86_64 0.17-1.fc24 fedora 3.8 M DEBUG util.py:393: python-six noarch 1.10.0-1.fc24 fedora 34 k DEBUG util.py:393: python-tables x86_64 3.2.2-2.fc24 fedora 1.3 M DEBUG util.py:393: python-tools x86_64 2.7.10-11.fc24 fedora 843 k DEBUG util.py:393: python2-joblib noarch 0.9.3-2.fc24 fedora 266 k DEBUG util.py:393: python2-matplotlib x86_64 1.4.3-8.fc24 fedora 35 M DEBUG util.py:393: python2-matplotlib-tk x86_64 1.4.3-8.fc24 fedora 79 k DEBUG util.py:393: python2-numexpr x86_64 2.4.6-2.fc24 fedora 183 k DEBUG util.py:393: python2-numpy x86_64 1:1.10.2-0.1rc1.fc24 fedora 3.1 M DEBUG util.py:393: python2-numpy-f2py x86_64 1:1.10.2-0.1rc1.fc24 fedora 252 k DEBUG util.py:393: python2-scipy x86_64 0.16.1-6.fc24 fedora 11 M DEBUG util.py:393: python3-Bottleneck x86_64 0.6.0-7.fc24 fedora 998 k DEBUG util.py:393: python3-cairo x86_64 1.10.0-14.fc24 fedora 470 k DEBUG util.py:393: python3-dateutil noarch 1:2.4.2-3.fc24 fedora 89 k DEBUG util.py:393: python3-devel x86_64 3.5.0-5.fc24 fedora 193 k DEBUG util.py:393: python3-joblib noarch 0.9.3-2.fc24 fedora 269 k DEBUG util.py:393: python3-matplotlib x86_64 1.4.3-8.fc24 fedora 35 M DEBUG util.py:393: python3-matplotlib-tk x86_64 1.4.3-8.fc24 fedora 79 k DEBUG util.py:393: python3-nose noarch 1.3.7-6.fc24 fedora 288 k DEBUG util.py:393: python3-numexpr x86_64 2.4.6-2.fc24 fedora 186 k DEBUG util.py:393: python3-numpy x86_64 1:1.10.2-0.1rc1.fc24 fedora 2.9 M DEBUG util.py:393: python3-numpy-f2py x86_64 1:1.10.2-0.1rc1.fc24 fedora 216 k DEBUG util.py:393: python3-pandas x86_64 0.17.0-3.fc24 fedora 6.4 M DEBUG util.py:393: python3-pyparsing noarch 2.0.6-1.fc24 fedora 109 k DEBUG util.py:393: python3-pytz noarch 2015.7-2.fc24 fedora 52 k DEBUG util.py:393: python3-scikit-learn x86_64 0.17-1.fc24 fedora 3.6 M DEBUG util.py:393: python3-scipy x86_64 0.16.1-6.fc24 fedora 10 M DEBUG util.py:393: python3-six noarch 1.10.0-1.fc24 fedora 35 k DEBUG util.py:393: python3-tables x86_64 3.2.2-2.fc24 fedora 1.3 M DEBUG util.py:393: python3-tkinter x86_64 3.5.0-5.fc24 fedora 352 k Rebuilding in koji: http://koji.fedoraproject.org/koji/taskinfo?taskID=11987784 zbyszek's scratch build of python-pyriemann-0.2.3-2.fc24.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=11987784 Spec URL: https://ignatenkobrain.fedorapeople.org/neurofedora/python-pyriemann.spec SRPM URL: https://ignatenkobrain.fedorapeople.org/neurofedora/python-pyriemann-0.2.3-3.fc24.src.rpm Fixed building. - license is OK - license file is present, %license is used - python packaging template is used - requires and provides are sane - tests pass - latest version - rpmlint: Checking: python2-pyriemann-0.2.3-3.fc24.noarch.rpm python3-pyriemann-0.2.3-3.fc24.noarch.rpm python-pyriemann-0.2.3-3.fc24.src.rpm python2-pyriemann.noarch: E: explicit-lib-dependency python-matplotlib python2-pyriemann.noarch: E: explicit-lib-dependency python2-joblib python2-pyriemann.noarch: W: spelling-error Summary(en_US) Covariance -> Co variance, Co-variance, Variance python2-pyriemann.noarch: W: spelling-error %description -l en_US covariance -> co variance, co-variance, variance python2-pyriemann.noarch: W: spelling-error %description -l en_US riemannian -> Riemann, Marianne, Annmarie python2-pyriemann.noarch: W: spelling-error %description -l en_US biosignals -> bio signals, bio-signals, signals python3-pyriemann.noarch: E: explicit-lib-dependency python3-joblib python3-pyriemann.noarch: E: explicit-lib-dependency python3-matplotlib python3-pyriemann.noarch: W: spelling-error Summary(en_US) Covariance -> Co variance, Co-variance, Variance python3-pyriemann.noarch: W: spelling-error %description -l en_US covariance -> co variance, co-variance, variance python3-pyriemann.noarch: W: spelling-error %description -l en_US riemannian -> Riemann, Marianne, Annmarie python3-pyriemann.noarch: W: spelling-error %description -l en_US biosignals -> bio signals, bio-signals, signals python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/distance.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/tangentspace.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/base.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/clustering.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/spatialfilters.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/classification.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/channelselection.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/covariance.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/mean.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/stats.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/estimation.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/tangentspace.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/__pycache__/__init__.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/__init__.cpython-35.opt-1.pyc python3-pyriemann.noarch: W: python-bytecode-without-source /usr/lib/python3.5/site-packages/pyriemann/utils/__pycache__/geodesic.cpython-35.opt-1.pyc python-pyriemann.src: W: spelling-error Summary(en_US) Covariance -> Co variance, Co-variance, Variance python-pyriemann.src: W: spelling-error %description -l en_US covariance -> co variance, co-variance, variance python-pyriemann.src: W: spelling-error %description -l en_US riemannian -> Riemann, Marianne, Annmarie python-pyriemann.src: W: spelling-error %description -l en_US biosignals -> bio signals, bio-signals, signals 3 packages and 0 specfiles checked; 4 errors, 27 warnings. All bogus. Package is APPROVED. Package request has been approved: https://admin.fedoraproject.org/pkgdb/package/python-pyriemann python-pyriemann-0.2.3-3.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2015-88a579766b python-pyriemann-0.2.3-3.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report. If you want to test the update, you can install it with $ su -c 'dnf --enablerepo=updates-testing update python-pyriemann' You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-88a579766b python-pyriemann-0.2.3-3.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report. |