Bug 1307383

Summary:

clustal-omega: FTBFS in rawhide

Product:

[Fedora] Fedora

Reporter:

Fedora Release Engineering <releng>

Component:

clustal-omega

Assignee:

Mukundan Ragavan <nonamedotc>

Status:

CLOSED RAWHIDE

QA Contact:

Fedora Extras Quality Assurance <extras-qa>

Severity:

unspecified

Docs Contact:

Priority:

unspecified

Version:

rawhide

CC:

nonamedotc, yselkowi

Target Milestone:

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Target Release:

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Hardware:

Unspecified

OS:

Unspecified

Whiteboard:

Fixed In Version:

Doc Type:

Bug Fix

Doc Text:

Story Points:

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Clone Of:

Environment:

Last Closed:

2016-02-17 04:17:17 UTC

Type:

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Regression:

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Mount Type:

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Documentation:

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CRM:

Verified Versions:

Category:

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oVirt Team:

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RHEL 7.3 requirements from Atomic Host:

Cloudforms Team:

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Target Upstream Version:

Bug Depends On:

Bug Blocks:

1305208

Attachments:

Description	Flags
build.log	none
root.log	none
state.log	none

Description Fedora Release Engineering 2016-02-13 21:08:33 UTC

Your package clustal-omega failed to build from source in current rawhide.

http://koji.fedoraproject.org/koji/taskinfo?taskID=12809494

For details on mass rebuild see https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

Comment 1 Fedora Release Engineering 2016-02-13 21:08:35 UTC

Created attachment 1124219 [details]
build.log

Comment 2 Fedora Release Engineering 2016-02-13 21:08:36 UTC

Created attachment 1124220 [details]
root.log

Comment 3 Fedora Release Engineering 2016-02-13 21:08:37 UTC

Created attachment 1124221 [details]
state.log

Comment 4 Yaakov Selkowitz 2016-02-17 02:51:10 UTC

src/hhalign/util-C.h defines float log2(float) and float log10(float) inline functions which conflict with those in <math.h>.  (The proper name for these signatures in the C standard library are log2f and log10f.)  Removing those two functions fixes the build (std::log2 and std::log10 are used in their place).

Comment 5 Upstream Release Monitoring 2016-02-17 04:10:07 UTC

nonamedotc's clustal-omega-1.2.1-9.fc24 completed http://koji.fedoraproject.org/koji/buildinfo?buildID=736472

Comment 6 Mukundan Ragavan 2016-02-17 04:17:17 UTC

Thanks Yaakov for not just showing me how to fix it, but also for the explanation of what the code does...