Bug 2003918

Summary:	bowtie-1.3.1 is available
Product:	[Fedora] Fedora	Reporter:	Upstream Release Monitoring <upstream-release-monitoring>
Component:	bowtie	Assignee:	Jun Aruga <jaruga>
Status:	CLOSED ERRATA	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	bloch, jaruga
Target Milestone:	---	Keywords:	FutureFeature, Reopened, Triaged
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:	bowtie-1.3.1-1.fc39 bowtie-1.3.1-1.fc38	Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2023-02-20 13:28:05 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:

Description Upstream Release Monitoring 2021-09-14 07:16:26 UTC

Latest upstream release: 1.3.1
Current version/release in rawhide: 1.3.0-3.fc35
URL: http://bowtie-bio.sourceforge.net/index.shtml

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from anitya: https://release-monitoring.org/project/81530/

Comment 1 Fedora Admin user for bugzilla script actions 2023-02-07 00:05:22 UTC

This package has changed maintainer in Fedora. Reassigning to the new maintainer of this component.

Comment 2 Miro Hrončok 2023-02-10 20:56:50 UTC

Automation has figured out the package is retired in rawhide.

If you like it to be unretired, please open a ticket at https://pagure.io/releng/new_issue?template=package_unretirement

Comment 3 Jun Aruga 2023-02-13 13:32:59 UTC

Sorry for the situation. I will continue to maintain this package.

Comment 4 Jun Aruga 2023-02-13 13:40:25 UTC

> Automation has figured out the package is retired in rawhide.
> 
> If you like it to be unretired, please open a ticket at https://pagure.io/releng/new_issue?template=package_unretirement

I opened the ticket.

Unretire rpms/bowtie
https://pagure.io/releng/issue/11282

Comment 5 Jun Aruga 2023-02-18 00:37:31 UTC

Working in progress to rebase bowtie to the latest version 1.3.1 on my forked repo's branch: https://src.fedoraproject.org/fork/jaruga/rpms/simde/tree/wip/rebase

Working for one test failure: https://github.com/BenLangmead/bowtie/issues/136 . Maybe I will just trim the gcc flag `-Wp,-D_GLIBCXX_ASSERTIONS` to pass the tests.

Comment 6 Jun Aruga 2023-02-18 01:52:21 UTC

I sent the PR: https://src.fedoraproject.org/rpms/bowtie/pull-request/3 .

Comment 7 Jun Aruga 2023-02-18 12:01:47 UTC

The PR was merged. I have an issue when running the `fedpkg build` that I experienced in another package. I assume the package was not properly unretired.
Asking at <https://pagure.io/releng/issue/11282#comment-841914>.

Comment 8 Fedora Update System 2023-02-20 13:27:36 UTC

FEDORA-2023-74d07e7477 has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-74d07e7477

Comment 9 Fedora Update System 2023-02-20 13:28:05 UTC

FEDORA-2023-74d07e7477 has been pushed to the Fedora 39 stable repository.
If problem still persists, please make note of it in this bug report.

Comment 10 Fedora Update System 2023-02-21 20:22:04 UTC

FEDORA-2023-9a95dcf3fb has been submitted as an update to Fedora 38. https://bodhi.fedoraproject.org/updates/FEDORA-2023-9a95dcf3fb

Comment 11 Fedora Update System 2023-02-22 13:32:03 UTC

FEDORA-2023-9a95dcf3fb has been pushed to the Fedora 38 testing repository.

You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-9a95dcf3fb

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 12 Fedora Update System 2023-03-11 03:05:49 UTC

FEDORA-2023-9a95dcf3fb has been pushed to the Fedora 38 stable repository.
If problem still persists, please make note of it in this bug report.