Bug 2119546
| Summary: | samtools-1.23 is available | ||||||||||||||||||||||||||
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| Product: | [Fedora] Fedora | Reporter: | Upstream Release Monitoring <upstream-release-monitoring> | ||||||||||||||||||||||||
| Component: | samtools | Assignee: | Adam Huffman <bloch> | ||||||||||||||||||||||||
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||||||||||||||||||||||
| Severity: | unspecified | Docs Contact: | |||||||||||||||||||||||||
| Priority: | unspecified | ||||||||||||||||||||||||||
| Version: | rawhide | CC: | bloch, jaruga, ron | ||||||||||||||||||||||||
| Target Milestone: | --- | Keywords: | FutureFeature, Triaged | ||||||||||||||||||||||||
| Target Release: | --- | ||||||||||||||||||||||||||
| Hardware: | Unspecified | ||||||||||||||||||||||||||
| OS: | Unspecified | ||||||||||||||||||||||||||
| Whiteboard: | |||||||||||||||||||||||||||
| Fixed In Version: | samtools-1.23-1.el10_2 | Doc Type: | --- | ||||||||||||||||||||||||
| Doc Text: | Story Points: | --- | |||||||||||||||||||||||||
| Clone Of: | Environment: | ||||||||||||||||||||||||||
| Last Closed: | 2026-02-16 01:40:30 UTC | Type: | --- | ||||||||||||||||||||||||
| Regression: | --- | Mount Type: | --- | ||||||||||||||||||||||||
| Documentation: | --- | CRM: | |||||||||||||||||||||||||
| Verified Versions: | Category: | --- | |||||||||||||||||||||||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||||||||||||||||||||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||||||||||||||||||||||
| Embargoed: | |||||||||||||||||||||||||||
| Attachments: |
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Description
Upstream Release Monitoring
2022-08-18 18:36:34 UTC
Created attachment 1906390 [details]
Update to 1.16 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.16-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=90980943 Releases retrieved: 1.16.1 Upstream release that is considered latest: 1.16.1 Current version/release in rawhide: 1.15.1-1.fc38 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 1909306 [details]
Update to 1.16.1 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.16.1-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=91559805 Releases retrieved: 1.17 Upstream release that is considered latest: 1.17 Current version/release in rawhide: 1.15.1-2.fc38 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 1945677 [details]
Update to 1.17 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.17-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=97848729 Releases retrieved: 1.18 Upstream release that is considered latest: 1.18 Current version/release in rawhide: 1.15.1-3.fc39 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 1979992 [details]
Update to 1.18 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.18-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=103922500 Releases retrieved: 1.19 Upstream release that is considered latest: 1.19 Current version/release in rawhide: 1.15.1-3.fc39 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2004251 [details]
Update to 1.19 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=110324761 Releases retrieved: 1.19.1 Upstream release that is considered latest: 1.19.1 Current version/release in rawhide: 1.15.1-3.fc39 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2010002 [details]
Update to 1.19.1 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19.1-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=112240354 Releases retrieved: 1.19.2 Upstream release that is considered latest: 1.19.2 Current version/release in rawhide: 1.15.1-3.fc39 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2010499 [details]
Update to 1.19.2 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19.2-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=112341668 Releases retrieved: 1.20 Upstream release that is considered latest: 1.20 Current version/release in rawhide: 1.15.1-4.fc40 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2027253 [details]
Update to 1.20 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.20-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=116460394 Releases retrieved: 1.21 Upstream release that is considered latest: 1.21 Current version/release in rawhide: 1.15.1-5.fc41 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2046611 [details]
Update to 1.21 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.21-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=123317588 Releases retrieved: 1.22 Upstream release that is considered latest: 1.22 Current version/release in rawhide: 1.15.1-6.fc42 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2092226 [details]
Update to 1.22 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.22-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=133350253 Releases retrieved: 1.22.1 Upstream release that is considered latest: 1.22.1 Current version/release in rawhide: 1.15.1-6.fc42 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Scratch build failed. Details below:
Fault: <Fault 1: "<class 'FileExistsError'>: [Errno 17] File exists: '/mnt/koji/work/cli-build/1752506661.0518396.LIJqVZIG'">
Traceback:
File "/usr/local/lib/python3.12/site-packages/hotness/use_cases/package_scratch_build_use_case.py", line 56, in build
result = self.builder.build(request.package, request.opts)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/hotness/builders/koji.py", line 252, in build
output["build_id"] = self._scratch_build(session, package.name, srpm)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/hotness/builders/koji.py", line 469, in _scratch_build
session.uploadWrapper(source, serverdir)
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3406, in uploadWrapper
self.fastUpload(localfile, path, name, callback, blocksize, overwrite, volume=volume)
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3303, in fastUpload
result = self._callMethod('rawUpload', (chunk, ofs, path, name), callopts)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3120, in _renew_expired_session
return func(self, *args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3199, in _callMethod
raise err
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3146, in _callMethod
return self._sendCall(handler, headers, request)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3039, in _sendCall
raise e
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3035, in _sendCall
return self._sendOneCall(handler, headers, request)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3088, in _sendOneCall
ret = self._read_xmlrpc_response(r)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3100, in _read_xmlrpc_response
result = u.close()
^^^^^^^^^
File "/usr/lib64/python3.12/xmlrpc/client.py", line 668, in close
raise Fault(**self._stack[0])
If you think this issue is caused by some bug in the-new-hotness, please report it on the-new-hotness issue tracker: https://github.com/fedora-infra/the-new-hotness/issues
Releases retrieved: 1.23 Upstream release that is considered latest: 1.23 Current version/release in rawhide: 1.15.1-7.fc43 URL: http://www.htslib.org/ Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/ More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from Anitya: https://release-monitoring.org/project/4759/ To change the monitoring settings for the project, please visit: https://src.fedoraproject.org/rpms/samtools Created attachment 2118954 [details]
Update to 1.23 (#2119546)
the-new-hotness/release-monitoring.org's scratch build of samtools-1.23-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=140087705 FEDORA-EPEL-2026-f63c2fce6f (bcftools-1.23-1.el10_2, htslib-1.23-1.el10_2, and 1 more) has been submitted as an update to Fedora EPEL 10.2. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2026-f63c2fce6f FEDORA-EPEL-2026-f63c2fce6f has been pushed to the Fedora EPEL 10.2 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2026-f63c2fce6f See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. FEDORA-EPEL-2026-f63c2fce6f (bcftools-1.23-1.el10_2, htslib-1.23-1.el10_2, and 1 more) has been pushed to the Fedora EPEL 10.2 stable repository. If problem still persists, please make note of it in this bug report. |