Bug 2119546 - samtools-1.23 is available
Summary: samtools-1.23 is available
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: samtools
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Adam Huffman
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2022-08-18 18:36 UTC by Upstream Release Monitoring
Modified: 2026-02-16 01:40 UTC (History)
3 users (show)

Fixed In Version: samtools-1.23-1.el10_2
Clone Of:
Environment:
Last Closed: 2026-02-16 01:40:30 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)
Update to 1.16 (#2119546) (850 bytes, patch)
2022-08-18 18:36 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.16.1 (#2119546) (857 bytes, patch)
2022-09-03 05:12 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.17 (#2119546) (943 bytes, patch)
2023-02-22 08:44 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.18 (#2119546) (943 bytes, patch)
2023-07-26 01:56 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.19 (#2119546) (943 bytes, patch)
2023-12-14 11:16 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.19.1 (#2119546) (951 bytes, patch)
2024-01-24 02:10 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.19.2 (#2119546) (951 bytes, patch)
2024-01-25 14:21 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.20 (#2119546) (943 bytes, patch)
2024-04-16 15:53 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.21 (#2119546) (943 bytes, patch)
2024-09-12 20:30 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.22 (#2119546) (943 bytes, patch)
2025-05-30 13:27 UTC, Upstream Release Monitoring
no flags Details | Diff
Update to 1.23 (#2119546) (943 bytes, patch)
2025-12-16 18:36 UTC, Upstream Release Monitoring
no flags Details | Diff

Description Upstream Release Monitoring 2022-08-18 18:36:34 UTC
Releases retrieved: 1.16
Upstream release that is considered latest: 1.16
Current version/release in rawhide: 1.15.1-1.fc38
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 1 Upstream Release Monitoring 2022-08-18 18:36:39 UTC
Created attachment 1906390 [details]
Update to 1.16 (#2119546)

Comment 2 Upstream Release Monitoring 2022-08-18 18:43:19 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.16-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=90980943

Comment 3 Upstream Release Monitoring 2022-09-03 05:12:16 UTC
Releases retrieved: 1.16.1
Upstream release that is considered latest: 1.16.1
Current version/release in rawhide: 1.15.1-1.fc38
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 4 Upstream Release Monitoring 2022-09-03 05:12:22 UTC
Created attachment 1909306 [details]
Update to 1.16.1 (#2119546)

Comment 5 Upstream Release Monitoring 2022-09-03 05:17:49 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.16.1-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=91559805

Comment 6 Upstream Release Monitoring 2023-02-22 08:44:39 UTC
Releases retrieved: 1.17
Upstream release that is considered latest: 1.17
Current version/release in rawhide: 1.15.1-2.fc38
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 7 Upstream Release Monitoring 2023-02-22 08:44:44 UTC
Created attachment 1945677 [details]
Update to 1.17 (#2119546)

Comment 8 Upstream Release Monitoring 2023-02-22 08:53:37 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.17-1.fc36.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=97848729

Comment 9 Upstream Release Monitoring 2023-07-26 01:56:47 UTC
Releases retrieved: 1.18
Upstream release that is considered latest: 1.18
Current version/release in rawhide: 1.15.1-3.fc39
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 10 Upstream Release Monitoring 2023-07-26 01:56:51 UTC
Created attachment 1979992 [details]
Update to 1.18 (#2119546)

Comment 11 Upstream Release Monitoring 2023-07-26 02:03:10 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.18-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=103922500

Comment 12 Upstream Release Monitoring 2023-12-14 11:16:20 UTC
Releases retrieved: 1.19
Upstream release that is considered latest: 1.19
Current version/release in rawhide: 1.15.1-3.fc39
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 13 Upstream Release Monitoring 2023-12-14 11:16:33 UTC
Created attachment 2004251 [details]
Update to 1.19 (#2119546)

Comment 14 Upstream Release Monitoring 2023-12-14 11:28:45 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=110324761

Comment 15 Upstream Release Monitoring 2024-01-24 02:09:58 UTC
Releases retrieved: 1.19.1
Upstream release that is considered latest: 1.19.1
Current version/release in rawhide: 1.15.1-3.fc39
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 16 Upstream Release Monitoring 2024-01-24 02:10:49 UTC
Created attachment 2010002 [details]
Update to 1.19.1 (#2119546)

Comment 17 Upstream Release Monitoring 2024-01-24 02:16:13 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19.1-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=112240354

Comment 18 Upstream Release Monitoring 2024-01-25 14:21:04 UTC
Releases retrieved: 1.19.2
Upstream release that is considered latest: 1.19.2
Current version/release in rawhide: 1.15.1-3.fc39
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 19 Upstream Release Monitoring 2024-01-25 14:21:17 UTC
Created attachment 2010499 [details]
Update to 1.19.2 (#2119546)

Comment 20 Upstream Release Monitoring 2024-01-25 14:33:43 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.19.2-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=112341668

Comment 21 Upstream Release Monitoring 2024-04-16 15:53:35 UTC
Releases retrieved: 1.20
Upstream release that is considered latest: 1.20
Current version/release in rawhide: 1.15.1-4.fc40
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 22 Upstream Release Monitoring 2024-04-16 15:53:40 UTC
Created attachment 2027253 [details]
Update to 1.20 (#2119546)

Comment 23 Upstream Release Monitoring 2024-04-16 15:59:49 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.20-1.fc38.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=116460394

Comment 24 Upstream Release Monitoring 2024-09-12 20:30:06 UTC
Releases retrieved: 1.21
Upstream release that is considered latest: 1.21
Current version/release in rawhide: 1.15.1-5.fc41
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 25 Upstream Release Monitoring 2024-09-12 20:30:10 UTC
Created attachment 2046611 [details]
Update to 1.21 (#2119546)

Comment 26 Upstream Release Monitoring 2024-09-12 20:34:57 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.21-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=123317588

Comment 27 Upstream Release Monitoring 2025-05-30 13:26:58 UTC
Releases retrieved: 1.22
Upstream release that is considered latest: 1.22
Current version/release in rawhide: 1.15.1-6.fc42
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 28 Upstream Release Monitoring 2025-05-30 13:27:02 UTC
Created attachment 2092226 [details]
Update to 1.22 (#2119546)

Comment 29 Upstream Release Monitoring 2025-05-30 13:32:32 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.22-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=133350253

Comment 30 Upstream Release Monitoring 2025-07-14 15:24:18 UTC
Releases retrieved: 1.22.1
Upstream release that is considered latest: 1.22.1
Current version/release in rawhide: 1.15.1-6.fc42
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 31 Upstream Release Monitoring 2025-07-14 15:24:22 UTC
Scratch build failed. Details below:

Fault: <Fault 1: "<class 'FileExistsError'>: [Errno 17] File exists: '/mnt/koji/work/cli-build/1752506661.0518396.LIJqVZIG'">
Traceback:
  File "/usr/local/lib/python3.12/site-packages/hotness/use_cases/package_scratch_build_use_case.py", line 56, in build
    result = self.builder.build(request.package, request.opts)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.12/site-packages/hotness/builders/koji.py", line 252, in build
    output["build_id"] = self._scratch_build(session, package.name, srpm)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.12/site-packages/hotness/builders/koji.py", line 469, in _scratch_build
    session.uploadWrapper(source, serverdir)
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3406, in uploadWrapper
    self.fastUpload(localfile, path, name, callback, blocksize, overwrite, volume=volume)
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3303, in fastUpload
    result = self._callMethod('rawUpload', (chunk, ofs, path, name), callopts)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3120, in _renew_expired_session
    return func(self, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3199, in _callMethod
    raise err
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3146, in _callMethod
    return self._sendCall(handler, headers, request)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3039, in _sendCall
    raise e
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3035, in _sendCall
    return self._sendOneCall(handler, headers, request)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3088, in _sendOneCall
    ret = self._read_xmlrpc_response(r)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/koji/__init__.py", line 3100, in _read_xmlrpc_response
    result = u.close()
             ^^^^^^^^^
  File "/usr/lib64/python3.12/xmlrpc/client.py", line 668, in close
    raise Fault(**self._stack[0])

If you think this issue is caused by some bug in the-new-hotness, please report it on the-new-hotness issue tracker: https://github.com/fedora-infra/the-new-hotness/issues

Comment 32 Upstream Release Monitoring 2025-12-16 18:36:10 UTC
Releases retrieved: 1.23
Upstream release that is considered latest: 1.23
Current version/release in rawhide: 1.15.1-7.fc43
URL: http://www.htslib.org/

Please consult the package updates policy before you issue an update to a stable branch: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/


More information about the service that created this bug can be found at: https://docs.fedoraproject.org/en-US/package-maintainers/Upstream_Release_Monitoring


Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream.


Based on the information from Anitya: https://release-monitoring.org/project/4759/


To change the monitoring settings for the project, please visit:
https://src.fedoraproject.org/rpms/samtools

Comment 33 Upstream Release Monitoring 2025-12-16 18:36:13 UTC
Created attachment 2118954 [details]
Update to 1.23 (#2119546)

Comment 34 Upstream Release Monitoring 2025-12-16 18:44:27 UTC
the-new-hotness/release-monitoring.org's scratch build of samtools-1.23-1.fc40.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=140087705

Comment 35 Fedora Update System 2026-02-07 18:38:19 UTC
FEDORA-EPEL-2026-f63c2fce6f (bcftools-1.23-1.el10_2, htslib-1.23-1.el10_2, and 1 more) has been submitted as an update to Fedora EPEL 10.2.
https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2026-f63c2fce6f

Comment 36 Fedora Update System 2026-02-08 01:40:53 UTC
FEDORA-EPEL-2026-f63c2fce6f has been pushed to the Fedora EPEL 10.2 testing repository.

You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2026-f63c2fce6f

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 37 Fedora Update System 2026-02-16 01:40:30 UTC
FEDORA-EPEL-2026-f63c2fce6f (bcftools-1.23-1.el10_2, htslib-1.23-1.el10_2, and 1 more) has been pushed to the Fedora EPEL 10.2 stable repository.
If problem still persists, please make note of it in this bug report.


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