Bug 2124489

Summary: bionetgen-2.8.4-1.fc38 FTBFS: configuring in cvode-2.6.0: configure: error: unrecognized option: --runstatedir=/run
Product: [Fedora] Fedora Reporter: Petr Pisar <ppisar>
Component: bionetgenAssignee: Zbigniew Jędrzejewski-Szmek <zbyszek>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: rawhideCC: neuro-sig, trpost, zbyszek
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OS: Unspecified   
URL: https://koschei.fedoraproject.org/package/bionetgen?collection=f38
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Fixed In Version: bionetgen-2.8.4-2.fc38 Doc Type: If docs needed, set a value
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Last Closed: 2022-09-09 23:40:05 UTC Type: Bug
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Bug Blocks: 2117176    

Description Petr Pisar 2022-09-06 10:26:34 UTC 
bionetgen-2.8.4-1.fc38 fails to build in Fedora 38:

=== configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr'  '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--runstatedir=/run' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=x86_64-redhat-linux-gnu' 'host_alias=x86_64-redhat-linux-gnu' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' 'LT_SYS_LIBRARY_PATH=/usr/lib64:' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' --cache-file=/dev/null --srcdir=.
configure: error: unrecognized option: --runstatedir=/run
Try `./configure --help' for more information.
configure: error: ./configure failed for cvode-2.6.0

This is triggered by upgrading redhat-rpm-config from 229-1.fc38 to 230-1.fc38 which added --runstatedir=/run option to %configutre macro. It seems that bionetgen spec file does not regenerate all configure scripts with autoconf sources.
Comment 1 Fedora Update System 2022-09-09 21:06:20 UTC 
FEDORA-2022-dd752cd736 has been submitted as an update to Fedora 38. https://bodhi.fedoraproject.org/updates/FEDORA-2022-dd752cd736
Comment 2 Fedora Update System 2022-09-09 23:40:05 UTC 
FEDORA-2022-dd752cd736 has been pushed to the Fedora 38 stable repository.
If problem still persists, please make note of it in this bug report.