Bug 2175184
| Summary: | neuron fails to build with Python 3.12: ModuleNotFoundError: No module named 'distutils' | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Tomáš Hrnčiar <thrnciar> |
| Component: | neuron | Assignee: | Ben Beasley <code> |
| Status: | CLOSED EOL | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | 39 | CC: | code, mhroncok, neuro-sig, sanjay.ankur, thrnciar |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2024-11-27 21:07:58 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 2135404 | ||
Upstream is aware of the need to port away from distutils: “Porting from Distutils” https://github.com/neuronsimulator/nrn/issues/2076 “Python packaging after distutils: setuptools.build_meta ?” https://github.com/neuronsimulator/nrn/issues/2228 What’s confusing me here is that the spec file already BuildRequires python3-setuptools, and yet, in the most recent COPR build, we had: + /usr/bin/python3 setup.py build_ext --build-lib=/builddir/build/BUILD/nrn-8.2.2/redhat-linux-build/lib/python Traceback (most recent call last): File "/builddir/build/BUILD/nrn-8.2.2/redhat-linux-build/share/lib/python/neuron/rxd/geometry3d/setup.py", line 19, in <module> from distutils.core import setup ModuleNotFoundError: No module named 'distutils' [neuron (rawhide %)]$ cd nrn-8.2.2 [nrn-8.2.2 (rpm-build *%)]$ rg SETUPTOOLS_USE_DISTUTILS src/neuronmusic/CMakeLists.txt 29:export SETUPTOOLS_USE_DISTUTILS=stdlib 100:export SETUPTOOLS_USE_DISTUTILS=stdlib share/lib/python/neuron/rxd/geometry3d/CMakeLists.txt 73:export SETUPTOOLS_USE_DISTUTILS=stdlib docs/changelog.md 23:- SETUPTOOLS_USE_DISTUTILS=stdlib (#1924) Reported upstream: Setting SETUPTOOLS_USE_DISTUTILS=stdlib does not work on Python 3.12 https://github.com/neuronsimulator/nrn/issues/2263 PR to work around: https://src.fedoraproject.org/rpms/neuron/pull-request/4 This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle. Changing version to 39. This message is a reminder that Fedora Linux 39 is nearing its end of life. Fedora will stop maintaining and issuing updates for Fedora Linux 39 on 2024-11-26. It is Fedora's policy to close all bug reports from releases that are no longer maintained. At that time this bug will be closed as EOL if it remains open with a 'version' of '39'. Package Maintainer: If you wish for this bug to remain open because you plan to fix it in a currently maintained version, change the 'version' to a later Fedora Linux version. Note that the version field may be hidden. Click the "Show advanced fields" button if you do not see it. Thank you for reporting this issue and we are sorry that we were not able to fix it before Fedora Linux 39 is end of life. If you would still like to see this bug fixed and are able to reproduce it against a later version of Fedora Linux, you are encouraged to change the 'version' to a later version prior to this bug being closed. Fedora Linux 39 entered end-of-life (EOL) status on 2024-11-26. Fedora Linux 39 is no longer maintained, which means that it will not receive any further security or bug fix updates. As a result we are closing this bug. If you can reproduce this bug against a currently maintained version of Fedora Linux please feel free to reopen this bug against that version. Note that the version field may be hidden. Click the "Show advanced fields" button if you do not see the version field. If you are unable to reopen this bug, please file a new report against an active release. Thank you for reporting this bug and we are sorry it could not be fixed. |
neuron fails to build with Python 3.12.0a5. + /usr/bin/python3 setup.py build_ext --build-lib=/builddir/build/BUILD/nrn-8.2.2/redhat-linux-build/lib/python Traceback (most recent call last): File "/builddir/build/BUILD/nrn-8.2.2/redhat-linux-build/share/lib/python/neuron/rxd/geometry3d/setup.py", line 19, in <module> from distutils.core import setup ModuleNotFoundError: No module named 'distutils' Remove the distutils package. It was deprecated in Python 3.10 by PEP 632 “Deprecate distutils module”. For projects still using distutils and cannot be updated to something else, the setuptools project can be installed: it still provides distutils. (Contributed by Victor Stinner in gh-92584.) If your package is listed in [0], you may workaround this issue by BuildRequiring python-setuptools, note that adding such BuildRequires might however hide some transitive dependency problem, if the distutils import comes from a dependency. Cooperation with upstream is recommended. Additional context [1]. [0] https://lists.fedoraproject.org/archives/list/python-devel@lists.fedoraproject.org/message/6BHNAWHE7M5VY3YQVJLOYHLY4M7KIFFN/ [1] https://lists.fedoraproject.org/archives/list/python-devel@lists.fedoraproject.org/thread/N6ITYHLRWIDNYNXGPYG2ZHF3ZLQWZN7L/ https://docs.python.org/3.12/whatsnew/3.12.html For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.12/fedora-rawhide-x86_64/05589155-neuron/ For all our attempts to build neuron with Python 3.12, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.12/package/neuron/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.12: https://copr.fedorainfracloud.org/coprs/g/python/python3.12/ Let us know here if you have any questions. Python 3.12 is planned to be included in Fedora 39. To make that update smoother, we're building Fedora packages with all pre-releases of Python 3.12. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.