Bug 2220011

Summary:	F39FailsToInstall: python3-h5py, python3-h5py-mpich, python3-h5py-openmpi
Product:	[Fedora] Fedora	Reporter:	Fedora Fails To Install <fti-bugs>
Component:	h5py	Assignee:	Terje Røsten <terje.rosten>
Status:	CLOSED WORKSFORME	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	mhroncok, orion, steve.traylen, terje.rosten
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:		Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2023-07-13 11:32:41 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:
Bug Blocks:	2135404, 2168845, 2219950, 2219971, 2219989, 2220027, 2220181, 2220191, 2220204, 2220206, 2220210, 2220241, 2220242, 2220243, 2220268, 2220270, 2220298, 2220304, 2220306, 2220333, 2220334, 2220356, 2220361, 2220423, 2220438, 2220444, 2220576

Description Fedora Fails To Install 2023-07-05 19:04:42 UTC

Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (h5py) Fails To Install in Fedora 39:

can't install python3-h5py:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-3.8.0-1.fc39.x86_64
  - nothing provides python3.11dist(numpy) >= 1.14.5 needed by python3-h5py-3.8.0-1.fc39.x86_64
  
can't install python3-h5py-mpich:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-mpich-3.8.0-1.fc39.x86_64
  
can't install python3-h5py-openmpi:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-openmpi-3.8.0-1.fc39.x86_64
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-h5py python3-h5py-mpich python3-h5py-openmpi


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Miro Hrončok 2023-07-06 23:23:08 UTC

h5py hangs when building.

Comment 2 Miro Hrončok 2023-07-11 13:22:56 UTC

This hangs during openmpi tests. And other packages generally don't need the openmpi option. As a stopgap measure to unblock various other packages, we might consider disabling openmpi.



$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py-openmpi
bout++-0:5.0.0-6.fc39.src

$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py-mpich
bout++-0:5.0.0-6.fc39.src

$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py
PyMca-0:5.8.2-1.fc39.src
PyMca-0:5.8.2-1.fc39.x86_64
diffoscope-0:233-2.fc38.src
espresso-0:4.2.1-3.fc39.src
libsonata-0:0.1.11-12.fc39.src
morphio-0:3.3.3-5.fc39.src
python-dask-0:2023.4.1-1.fc39~bootstrap.src
python-dipy-0:1.5.0-4.fc38.src
python-emcee-0:3.1.4-1.fc39.src
python-exdir-0:0.4.2-5.fc38.src
python-fslpy-0:3.12.1-1.fc39.src
python-h5io-0:0.1.7-1.fc39.src
python-hdf5storage-0:0.1.18-8.fc38.src
python-hdmf-0:3.6.1-5.fc39.src
python-klusta-0:3.0.16-22.fc38.src
python-lazy-ops-0:0.2.0-6.fc38.src
python-lfpy-0:2.3-1.fc39.src
python-mne-0:1.3.1-1.fc39.src
python-nibabel-0:5.1.0-1.fc39.src
python-nixio-0:1.5.3-4.fc38.src
python-probeinterface-0:0.2.17-1.fc39.src
python-pymatreader-0:0.0.30-3.fc38.src
python-pynn-0:0.10.1-2.fc38.src
python-pynwb-0:2.1.0-2.fc38.src
python-pyqtgraph-0:0.13.3-2.fc39.src
python-pyscf-0:2.2.1-1.fc39.src
python-simframe-0:1.0.2-4.fc38.src
python-spyking-circus-0:1.1.0-5.fc38.src
python-zarr-0:2.14.1-1.fc39.src
python3-dipy-0:1.5.0-4.fc38.x86_64
python3-espresso-mpich-0:4.2.1-3.fc39.x86_64
python3-espresso-openmpi-0:4.2.1-3.fc39.x86_64
python3-fslpy-0:3.12.1-1.fc39.noarch
python3-h5io-0:0.1.7-1.fc39.noarch
python3-hdf5storage-0:0.1.18-8.fc38.noarch
python3-hdmf-0:3.6.1-5.fc39.noarch
python3-klusta-0:3.0.16-22.fc38.noarch
python3-lazy-ops-0:0.2.0-6.fc38.noarch
python3-lfpy-0:2.3-1.fc39.x86_64
python3-nixio-0:1.5.3-4.fc38.noarch
python3-pymatreader-0:0.0.30-3.fc38.noarch
python3-pynwb-0:2.1.0-2.fc38.noarch
python3-pyscf-0:2.2.1-1.fc39.x86_64
python3-simframe-0:1.0.2-4.fc38.noarch
python3-spyking-circus-0:1.1.0-5.fc38.noarch
python3-tvb-data-0:1.5.9-12.fc39.noarch
veusz-0:3.6.2-1.fc39.src

Comment 3 Miro Hrončok 2023-07-12 06:02:21 UTC

https://src.fedoraproject.org/rpms/h5py/pull-request/6

Comment 4 Terje Røsten 2023-07-12 07:00:08 UTC

Merged and built: 
 https://koji.fedoraproject.org/koji/taskinfo?taskID=103255705

Comment 5 Fedora Fails To Install 2023-07-13 11:32:41 UTC

Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

All subpackages of a package against which this bug was filled are now installable or removed from Fedora 39.

Thanks for taking care of it!