Bug 2220333

Summary:	F39FailsToInstall: python3-mne
Product:	[Fedora] Fedora	Reporter:	Fedora Fails To Install <fti-bugs>
Component:	python-mne	Assignee:	Ankur Sinha (FranciscoD) <sanjay.ankur>
Status:	ASSIGNED ---	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	39	CC:	gui1ty, igor.raits, neuro-sig, sanjay.ankur
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:		Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:		Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:	2220011, 2220191, 2220266, 2220356, 2220358, 2220360, 2220433
Bug Blocks:	2135404, 2168845, 2220334, 2220423, 2231790

Description Fedora Fails To Install 2023-07-05 19:15:33 UTC

Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (python-mne) Fails To Install in Fedora 39:

can't install python3-mne:
  - nothing provides python3.11dist(matplotlib) needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(packaging) needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(jinja2) needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(tqdm) needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(decorator) needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python(abi) = 3.11 needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(scipy) >= 1.1 needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(numpy) >= 1.15.4 needed by python3-mne-1.3.1-1.fc39.x86_64
  - nothing provides python3.11dist(pooch) >= 1.5 needed by python3-mne-1.3.1-1.fc39.x86_64
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-mne


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Fedora Fails To Install 2023-07-13 11:54:56 UTC

Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

This package fails to install and maintainers are advised to take one of the following actions:

 - Fix this bug and close this bugzilla once the update makes it to the repository.
   (The same script that posted this comment will eventually close this bugzilla
   when the fixed package reaches the repository, so you don't have to worry about it.)

or

 - Move this bug to ASSIGNED if you plan on fixing this, but simply haven't done so yet.

or

 - Orphan the package if you no longer plan to maintain it.


If you do not take one of these actions, the process at https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/#_package_removal_for_long_standing_ftbfs_and_fti_bugs will continue.
This package may be orphaned in 7+ weeks.
This is the first reminder (step 3) from the policy.

Don't hesitate to ask for help on devel.org if you are unsure how to fix this bug.

Comment 2 Sandro 2023-07-22 16:10:58 UTC

One of the tests is hanging as can be observed in Koji:

https://koji.fedoraproject.org/koji/buildinfo?buildID=2234752

That job has been running for several days without progress. The same happened in the F39 mass rebuild.

I ran into the same issue trying a build for version 1.4.1 (bug 2203048) and reported it upstream. The test that hangs is `mne/stats/tests/test_cluster_level.py::test_thresholds[NumPy]`. For the current version of MNE in rawhide I added `test_cluster_level.py` to the disabled test. Build continues that way. But it throws errors and warnings for other tests:

XFAIL mne/viz/backends/tests/test_renderer.py::test_backend_environment_setup[foo]
ERROR mne/time_frequency/tests/test_spectrum.py::test_spectrum_errors - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
ERROR mne/viz/backends/tests/test_renderer.py::test_3d_functions[pyvistaqt] - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/decoding/tests/test_base.py::test_get_coef_inverse_transform[Scaler-kwargs0-True] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_inverse_transform[Scaler-kwargs0-False] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_inverse_transform[_Noop-kwargs1-True] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_inverse_transform[_Noop-kwargs1-False] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_multiclass_full[4-10-2] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_multiclass_full[4-3-2] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_multiclass_full[3-2-1] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_get_coef_multiclass_full[3-1-2] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_base.py::test_cross_val_multiscore - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_rank_deficiency - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_time_delaying_fast_calc[1] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_time_delaying_fast_calc[cuda] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_receptive_field_1d[1] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_receptive_field_1d[cuda] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_receptive_field_nd[1] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_receptive_field_nd[cuda] - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_receptive_field.py::test_inverse_coef - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_search_light.py::test_search_light - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/decoding/tests/test_search_light.py::test_generalization_light - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_search_light.py::test_cross_val_predict - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/decoding/tests/test_transformer.py::test_scaler[True-None] - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/io/brainvision/tests/test_brainvision.py::test_brainvision_data - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/stats/tests/test_permutations.py::test_permutation_t_test - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/tests/test_chpi.py::test_simulate_calculate_head_pos_chpi - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/tests/test_epochs.py::test_epochs_proj - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/time_frequency/tests/test_csd.py::test_csd_fourier - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/time_frequency/tests/test_csd.py::test_csd_multitaper - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/time_frequency/tests/test_csd.py::test_csd_morlet - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/time_frequency/tests/test_csd.py::test_csd_tfr - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/time_frequency/tests/test_tfr.py::test_plot_joint - pytest.PytestUnraisableExceptionWarning: Exception ignored in: <function tq...
FAILED mne/utils/tests/test_progressbar.py::test_progressbar - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/utils/tests/test_progressbar.py::test_progressbar_parallel_basic - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/utils/tests/test_progressbar.py::test_progressbar_parallel_advanced - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/utils/tests/test_progressbar.py::test_progressbar_parallel_more - DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled...
FAILED mne/viz/tests/test_raw.py::test_plot_raw_traces[matplotlib] - matplotlib._api.deprecation.MatplotlibDeprecationWarning: Setting data with...
= 35 failed, 2225 passed, 931 skipped, 579 deselected, 1 xfailed, 5 warnings, 2 errors in 404.45s (0:06:44) =

Hopefully, upstream has some hints allowing us to fix this or work around it in the current release. Tests also appear to hang at the end of testing after the summary is printed. Not sure what's going on.

Comment 3 Fedora Release Engineering 2023-08-16 07:17:09 UTC

This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle.
Changing version to 39.