Bug 2333956

Summary:	python-pyemd: FTBFS in Fedora Rawhide
Product:	[Fedora] Fedora	Reporter:	Sandro <gui1ty>
Component:	python-pyemd	Assignee:	Ankur Sinha (FranciscoD) <sanjay.ankur>
Status:	NEW ---	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	medium	Docs Contact:
Priority:	unspecified
Version:	42	CC:	code, neuro-sig, sanjay.ankur
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Linux
URL:	https://koschei.fedoraproject.org/package/python-pyemd
Whiteboard:
Fixed In Version:		Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:		Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:	2319698
Bug Blocks:	2332159, 2341193

Description Sandro 2024-12-24 09:19:50 UTC

Description of problem:
Package python-pyemd fails to build from source in Fedora Rawhide.

Version-Release number of selected component (if applicable):
1.0.0-7.fc41

Steps to Reproduce:
koji build --scratch f42 python-pyemd-1.0.0-7.fc41.src.rpm

Additional info:
This package is tracked by Koschei. See:
https://koschei.fedoraproject.org/package/python-pyemd

Reproducible: Always

Comment 1 Sandro 2024-12-24 09:20:29 UTC

Upstream appears dormant.

Comment 2 Ben Beasley 2025-01-27 13:37:40 UTC

Currently, I see:

============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/python-pyemd-1.0.0-build/pyemd-1.0.0
configfile: pytest.ini
collecting ... collected 36 items

README.rst::README.rst PASSED                                            [  2%]
test/test_pyemd.py::test_emd_1 PASSED                                    [  5%]
test/test_pyemd.py::test_emd_2 PASSED                                    [  8%]
test/test_pyemd.py::test_emd_3 Fatal Python error: Aborted

Current thread 0x00007f8fd544bbc0 (most recent call first):
  File "/builddir/build/BUILD/python-pyemd-1.0.0-build/pyemd-1.0.0/test/test_pyemd.py", line 49 in test_emd_3
  File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 159 in pytest_pyfunc_call
  File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3.13/site-packages/_pytest/python.py", line 1627 in runtest
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 174 in pytest_runtest_call
  File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 242 in <lambda>
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 341 in from_call
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 241 in call_and_report
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 132 in runtestprotocol
  File "/usr/lib/python3.13/site-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
  File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 362 in pytest_runtestloop
  File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 337 in _main
  File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 283 in wrap_session
  File "/usr/lib/python3.13/site-packages/_pytest/main.py", line 330 in pytest_cmdline_main
  File "/usr/lib/python3.13/site-packages/pluggy/_callers.py", line 103 in _multicall
  File "/usr/lib/python3.13/site-packages/pluggy/_manager.py", line 120 in _hookexec
  File "/usr/lib/python3.13/site-packages/pluggy/_hooks.py", line 513 in __call__
  File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 175 in main
  File "/usr/lib/python3.13/site-packages/_pytest/config/__init__.py", line 201 in console_main
  File "/usr/bin/pytest", line 8 in <module>

Extension modules: numpy._core._multiarray_umath, numpy.linalg._umath_linalg, pyemd.emd (total: 3)
/var/tmp/rpm-tmp.ay1KDJ: line 54:   353 Aborted                 (core dumped) CFLAGS="${CFLAGS:-${RPM_OPT_FLAGS}}" LDFLAGS="${LDFLAGS:-${RPM_LD_FLAGS}}" PATH="/builddir/build/BUILD/python-pyemd-1.0.0-build/BUILDROOT/usr/bin:$PATH" PYTHONPATH="${PYTHONPATH:-/builddir/build/BUILD/python-pyemd-1.0.0-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-pyemd-1.0.0-build/BUILDROOT/usr/lib/python3.13/site-packages}" PYTHONDONTWRITEBYTECODE=1 PYTEST_ADDOPTS="${PYTEST_ADDOPTS:-} --ignore=/builddir/build/BUILD/python-pyemd-1.0.0-build/pyemd-1.0.0/.pyproject-builddir" PYTEST_XDIST_AUTO_NUM_WORKERS="${PYTEST_XDIST_AUTO_NUM_WORKERS:-16}" /usr/bin/pytest

…which is rather worse than what was reported in https://github.com/wmayner/pyemd/issues/68.

Comment 3 Aoife Moloney 2025-02-26 13:20:35 UTC

This bug appears to have been reported against 'rawhide' during the Fedora Linux 42 development cycle.
Changing version to 42.