Bug 2459127

Summary: filesystem error: cannot copy: No such file or directory [/usr/lib/sysimage/libdnf5/packages.toml.new] [/usr/lib/sysimage/libdnf5/packages.toml]
Product: [Fedora] Fedora Reporter: Jens Petersen <petersen>
Component: dnf5Assignee: rpm-software-management
Status: CLOSED DUPLICATE QA Contact:
Severity: medium Docs Contact:
Priority: unspecified    
Version: 44CC: jonathan, pkratoch, ppisar, rpm-software-management
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Linux   
Whiteboard:
Fixed In Version: Doc Type: ---
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2026-04-17 07:50:30 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:

Description Jens Petersen 2026-04-17 07:48:22 UTC 
In a fresh F44 install I installed emacs and got the above "error" (though it succeeded)

Reproducible: Always

Steps to Reproduce:
1. install F44 Workstation
2. (I actually installed google-cloud-cli first from Google's repo)
3. sudo dnf install emacs
Actual Results:
3. 

fedora:~$ sudo dnf install emacs
Updating and loading repositories:
Repositories loaded.
Package                    Arch   Version                 Repository        Size
Installing:
 emacs                     x86_64 1:30.2-16.fc44          fedora         0.0   B
Installing dependencies:
 emacs-common              x86_64 1:30.2-16.fc44          fedora       103.7 MiB
 emacs-pgtk                x86_64 1:30.2-16.fc44          fedora       171.8 MiB
 emacsclient               x86_64 1:30.2-16.fc44          fedora        72.6 KiB
 gcc                       x86_64 0:16.0.1-0.10.fc44      fedora       120.6 MiB
 gdk-pixbuf2-modules-extra x86_64 0:2.44.0-2.fc44         fedora        85.1 KiB
 glibc-devel               x86_64 0:2.43-2.fc44           fedora         2.3 MiB
 kernel-headers            x86_64 0:6.19.6-300.fc44       fedora         6.9 MiB
 libXaw                    x86_64 0:1.0.16-5.fc44         fedora       519.0 KiB
 libgccjit                 x86_64 0:16.0.1-0.10.fc44      fedora        42.0 MiB
 libotf                    x86_64 0:0.9.16-8.fc44         fedora       238.1 KiB
 libtree-sitter            x86_64 0:0.25.10-2.fc44        fedora       212.1 KiB
 libxcrypt-devel           x86_64 0:4.5.2-3.fc44          fedora        31.0 KiB
 make                      x86_64 1:4.4.1-12.fc44         fedora         1.8 MiB
Installing weak dependencies:
 info                      x86_64 0:7.2-9.fc44            fedora       365.6 KiB
 libtree-sitter-bash       x86_64 0:0.25.1-3.fc44         fedora         1.3 MiB
 libtree-sitter-c          x86_64 0:0.24.1-5.fc44         fedora       614.8 KiB
 libtree-sitter-c-sharp    x86_64 0:0.23.1-4.fc44         fedora         5.7 MiB
 libtree-sitter-cmake      x86_64 0:0.7.2-1.fc44          fedora        99.8 KiB
 libtree-sitter-cpp        x86_64 0:0.23.4-7.fc44         fedora         3.3 MiB
 libtree-sitter-css        x86_64 0:0.25.0-2.fc44         fedora       126.4 KiB
 libtree-sitter-elixir     x86_64 0:0.3.4-6.fc44          fedora         1.4 MiB
 libtree-sitter-go         x86_64 0:0.25.0-3.fc44         fedora       227.5 KiB
 libtree-sitter-heex       x86_64 0:0.8.0-3.fc44          fedora        33.7 KiB
 libtree-sitter-html       x86_64 0:0.23.2-3.fc44         fedora        33.3 KiB
 libtree-sitter-java       x86_64 0:0.23.5-7.fc44         fedora       416.4 KiB
 libtree-sitter-javascript x86_64 0:0.25.0-2.fc44         fedora       420.5 KiB
 libtree-sitter-jsdoc      x86_64 0:0.25.0-2.fc44         fedora        45.1 KiB
 libtree-sitter-json       x86_64 0:0.24.8-7.fc44         fedora        17.0 KiB
 libtree-sitter-lua        x86_64 0:0.4.1-3.fc44          fedora        65.8 KiB
 libtree-sitter-php        x86_64 0:0.24.2-4.fc44         fedora         2.0 MiB
 libtree-sitter-phpdoc     x86_64 0:0.1.8-2.fc44          fedora       208.6 KiB
 libtree-sitter-python     x86_64 0:0.25.0-2.fc44         fedora       467.7 KiB
 libtree-sitter-ruby       x86_64 0:0.23.1-4.fc44         fedora         2.0 MiB
 libtree-sitter-rust       x86_64 0:0.24.1-1.fc44         fedora         1.1 MiB
 libtree-sitter-toml       x86_64 0:0.7.0-3.fc43          fedora        37.2 KiB
 libtree-sitter-typescript x86_64 0:0.23.2-5.fc44         fedora         2.7 MiB
 libtree-sitter-yaml       x86_64 0:0.7.2-2.fc44          fedora       202.5 KiB

Transaction Summary:
 Installing:        38 packages

Total size of inbound packages is 137 MiB. Need to download 137 MiB.
After this operation, 473 MiB extra will be used (install 473 MiB, remove 0 B).
Is this ok [y/N]: y
[ 1/38] emacs-1:30.2-16.fc44.x86_64     100% | 107.0 KiB/s |   9.6 KiB |  00m00s
[ 2/38] gdk-pixbuf2-modules-extra-0:2.4 100% | 161.6 KiB/s |  40.6 KiB |  00m00s
[ 3/38] emacs-common-1:30.2-16.fc44.x86 100% |  54.5 MiB/s |  43.0 MiB |  00m01s
[ 4/38] libotf-0:0.9.16-8.fc44.x86_64   100% |   2.5 MiB/s | 105.2 KiB |  00m00s
[ 5/38] libtree-sitter-0:0.25.10-2.fc44 100% |   5.4 MiB/s | 115.7 KiB |  00m00s
[ 6/38] emacsclient-1:30.2-16.fc44.x86_ 100% |   2.1 MiB/s |  38.6 KiB |  00m00s
[ 7/38] libgccjit-0:16.0.1-0.10.fc44.x8 100% |  21.4 MiB/s |  13.1 MiB |  00m01s
[ 8/38] libXaw-0:1.0.16-5.fc44.x86_64   100% |   9.1 MiB/s | 204.1 KiB |  00m00s
[ 9/38] make-1:4.4.1-12.fc44.x86_64     100% |  13.1 MiB/s | 588.7 KiB |  00m00s
[10/38] glibc-devel-0:2.43-2.fc44.x86_6 100% |  18.1 MiB/s | 612.7 KiB |  00m00s
[11/38] libxcrypt-devel-0:4.5.2-3.fc44. 100% |   1.7 MiB/s |  30.0 KiB |  00m00s
[12/38] kernel-headers-0:6.19.6-300.fc4 100% |  24.7 MiB/s |   1.7 MiB |  00m00s
[13/38] info-0:7.2-9.fc44.x86_64        100% |   6.5 MiB/s | 186.7 KiB |  00m00s
[14/38] libtree-sitter-bash-0:0.25.1-3. 100% |   6.2 MiB/s | 157.7 KiB |  00m00s
[15/38] libtree-sitter-c-0:0.24.1-5.fc4 100% |   6.2 MiB/s |  69.3 KiB |  00m00s
[16/38] libtree-sitter-c-sharp-0:0.23.1 100% |   6.8 MiB/s | 228.4 KiB |  00m00s
[17/38] libtree-sitter-cmake-0:0.7.2-1. 100% |   1.3 MiB/s |  28.7 KiB |  00m00s
[18/38] libtree-sitter-cpp-0:0.23.4-7.f 100% |   6.4 MiB/s | 197.2 KiB |  00m00s
[19/38] libtree-sitter-css-0:0.25.0-2.f 100% |   4.0 MiB/s |  33.1 KiB |  00m00s
[20/38] libtree-sitter-elixir-0:0.3.4-6 100% |   4.1 MiB/s | 127.1 KiB |  00m00s
[21/38] libtree-sitter-go-0:0.25.0-3.fc 100% |   3.1 MiB/s |  43.9 KiB |  00m00s
[22/38] libtree-sitter-heex-0:0.8.0-3.f 100% |   2.0 MiB/s |  18.7 KiB |  00m00s
[23/38] emacs-pgtk-1:30.2-16.fc44.x86_6 100% |  22.0 MiB/s |  32.9 MiB |  00m01s
[24/38] libtree-sitter-html-0:0.23.2-3. 100% | 173.2 KiB/s |  20.6 KiB |  00m00s
[25/38] libtree-sitter-java-0:0.23.5-7. 100% |   5.3 MiB/s |  54.2 KiB |  00m00s
[26/38] libtree-sitter-javascript-0:0.2 100% |   5.0 MiB/s |  56.8 KiB |  00m00s
[27/38] libtree-sitter-jsdoc-0:0.25.0-2 100% |   2.0 MiB/s |  22.5 KiB |  00m00s
[28/38] libtree-sitter-json-0:0.24.8-7. 100% |   1.6 MiB/s |  14.5 KiB |  00m00s
[29/38] libtree-sitter-lua-0:0.4.1-3.fc 100% |   1.2 MiB/s |  24.9 KiB |  00m00s
[30/38] libtree-sitter-php-0:0.24.2-4.f 100% |   7.5 MiB/s | 153.1 KiB |  00m00s
[31/38] libtree-sitter-python-0:0.25.0- 100% |   7.3 MiB/s |  67.2 KiB |  00m00s
[32/38] libtree-sitter-ruby-0:0.23.1-4. 100% |  12.6 MiB/s | 128.6 KiB |  00m00s
[33/38] libtree-sitter-rust-0:0.24.1-1. 100% |  14.2 MiB/s | 102.0 KiB |  00m00s
[34/38] libtree-sitter-phpdoc-0:0.1.8-2 100% |   1.1 MiB/s |  41.6 KiB |  00m00s
[35/38] libtree-sitter-typescript-0:0.2 100% |  20.7 MiB/s | 212.0 KiB |  00m00s
[36/38] libtree-sitter-toml-0:0.7.0-3.f 100% | 818.2 KiB/s |  19.6 KiB |  00m00s
[37/38] libtree-sitter-yaml-0:0.7.2-2.f 100% |   3.2 MiB/s |  45.3 KiB |  00m00s
[38/38] gcc-0:16.0.1-0.10.fc44.x86_64   100% |  43.3 MiB/s |  43.1 MiB |  00m01s
--------------------------------------------------------------------------------
[38/38] Total                           100% |  57.4 MiB/s | 137.5 MiB |  00m02s
Running transaction
[ 1/40] Verify package files            100% |  82.0   B/s |  38.0   B |  00m00s
[ 2/40] Prepare transaction             100% | 132.0   B/s |  38.0   B |  00m00s
[ 3/40] Installing libtree-sitter-0:0.2 100% |  14.9 MiB/s | 213.8 KiB |  00m00s
[ 4/40] Installing kernel-headers-0:6.1 100% |  38.0 MiB/s |   7.0 MiB |  00m00s
[ 5/40] Installing glibc-devel-0:2.43-2 100% |  28.4 MiB/s |   2.4 MiB |  00m00s
[ 6/40] Installing libxcrypt-devel-0:4. 100% |   4.6 MiB/s |  33.3 KiB |  00m00s
[ 7/40] Installing make-1:4.4.1-12.fc44 100% |  29.5 MiB/s |   1.8 MiB |  00m00s
[ 8/40] Installing gcc-0:16.0.1-0.10.fc 100% | 238.5 MiB/s | 120.7 MiB |  00m01s
[ 9/40] Installing libgccjit-0:16.0.1-0 100% | 320.6 MiB/s |  42.0 MiB |  00m00s
[10/40] Installing libXaw-0:1.0.16-5.fc 100% |  39.1 MiB/s | 520.5 KiB |  00m00s
[11/40] Installing libotf-0:0.9.16-8.fc 100% |   8.1 MiB/s | 241.4 KiB |  00m00s
[12/40] Installing emacsclient-1:30.2-1 100% |   2.0 MiB/s |  73.7 KiB |  00m00s
[13/40] Installing emacs-common-1:30.2- 100% |  82.9 MiB/s | 104.4 MiB |  00m01s
[14/40] Installing gdk-pixbuf2-modules- 100% |   3.8 MiB/s |  86.6 KiB |  00m00s
[15/40] Installing emacs-pgtk-1:30.2-16 100% | 110.4 MiB/s | 172.1 MiB |  00m02s
[16/40] Installing emacs-1:30.2-16.fc44 100% |  17.3 KiB/s | 124.0   B |  00m00s
[17/40] Installing libtree-sitter-bash- 100% |  68.2 MiB/s |   1.3 MiB |  00m00s
[18/40] Installing libtree-sitter-c-0:0 100% |  33.5 MiB/s | 616.7 KiB |  00m00s
[19/40] Installing libtree-sitter-c-sha 100% | 217.7 MiB/s |   5.7 MiB |  00m00s
[20/40] Installing libtree-sitter-cmake 100% |   5.9 MiB/s | 102.0 KiB |  00m00s
[21/40] Installing libtree-sitter-cpp-0 100% | 156.2 MiB/s |   3.3 MiB |  00m00s
[22/40] Installing libtree-sitter-css-0 100% |   8.9 MiB/s | 128.1 KiB |  00m00s
[23/40] Installing libtree-sitter-elixi 100% |  71.8 MiB/s |   1.4 MiB |  00m00s
[24/40] Installing libtree-sitter-go-0: 100% |  14.0 MiB/s | 229.4 KiB |  00m00s
[25/40] Installing libtree-sitter-heex- 100% |   2.2 MiB/s |  35.3 KiB |  00m00s
[26/40] Installing libtree-sitter-html- 100% |   3.4 MiB/s |  34.9 KiB |  00m00s
[27/40] Installing libtree-sitter-java- 100% |  21.5 MiB/s | 418.0 KiB |  00m00s
[28/40] Installing libtree-sitter-javas 100% |  24.3 MiB/s | 423.2 KiB |  00m00s
[29/40] Installing libtree-sitter-jsdoc 100% |   3.8 MiB/s |  46.9 KiB |  00m00s
[30/40] Installing libtree-sitter-json- 100% |   1.3 MiB/s |  18.5 KiB |  00m00s
[31/40] Installing libtree-sitter-lua-0 100% |   4.2 MiB/s |  68.1 KiB |  00m00s
[32/40] Installing libtree-sitter-php-0 100% | 117.6 MiB/s |   2.0 MiB |  00m00s
[33/40] Installing libtree-sitter-phpdo 100% |  12.1 MiB/s | 210.3 KiB |  00m00s
[34/40] Installing libtree-sitter-pytho 100% |  30.6 MiB/s | 469.6 KiB |  00m00s
[35/40] Installing libtree-sitter-ruby- 100% | 106.2 MiB/s |   2.0 MiB |  00m00s
[36/40] Installing libtree-sitter-rust- 100% |  49.2 MiB/s |   1.1 MiB |  00m00s
[37/40] Installing libtree-sitter-toml- 100% |   3.4 MiB/s |  38.8 KiB |  00m00s
[38/40] Installing libtree-sitter-types 100% |  91.7 MiB/s |   2.8 MiB |  00m00s
[39/40] Installing libtree-sitter-yaml- 100% |  14.2 MiB/s | 204.3 KiB |  00m00s
[40/40] Installing info-0:7.2-9.fc44.x8 100% | 135.3 KiB/s | 366.0 KiB |  00m03s
filesystem error: cannot copy: No such file or directory [/usr/lib/sysimage/libdnf5/packages.toml.new] [/usr/lib/sysimage/libdnf5/packages.toml]


Expected Results:
No such error message

Additional Information:
$ rpm -qf /usr/lib/sysimage/libdnf5/packages.toml
libdnf5-5.4.0.0-3.fc44.x86_64
Comment 1 Jens Petersen 2026-04-17 07:50:30 UTC 

*** This bug has been marked as a duplicate of bug 2457408 ***