Bug 804491

Summary: [abrt] grace-5.1.22-9.fc16: __GI___libc_malloc: Process /usr/bin/xmgrace was killed by signal 6 (SIGABRT)
Product: [Fedora] Fedora Reporter: Amit Goyal <amitgsir>
Component: graceAssignee: José Matos <jamatos>
Status: CLOSED CURRENTRELEASE QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: 16CC: andrzej.kuzniar, itamar, jamatos, pawarutj37, pertusus
Target Milestone: ---   
Target Release: ---   
Hardware: i686   
OS: Unspecified   
Whiteboard: abrt_hash:261615607d284d9127bc94029aa54d0a88fa6284
Fixed In Version: Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2012-12-01 09:45:57 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Attachments:
Description Flags
File: dso_list
none
File: maps
none
File: backtrace
none
File: backtrace none

Description Amit Goyal 2012-03-19 05:03:20 UTC 
libreport version: 2.0.8
abrt_version:   2.0.7
backtrace_rating: 4
cmdline:        xmgrace potential.xvg
crash_function: __GI___libc_malloc
executable:     /usr/bin/xmgrace
kernel:         3.2.9-2.fc16.i686
pid:            3657
pwd:            /usr/local/gromacs/share/1EMB_AllStrand_NoCRO
reason:         Process /usr/bin/xmgrace was killed by signal 6 (SIGABRT)
time:           Mon 19 Mar 2012 01:46:23 PM KST
uid:            0
username:       root
xsession_errors: xmgrace: malloc.c:2453: sYSMALLOc: Assertion `(old_top == (((mbinptr) (((char *) &((av)->bins[((1) - 1) * 2])) - __builtin_offsetof (struct malloc_chunk, fd)))) && old_size == 0) || ((unsigned long) (old_size) >= (unsigned long)((((__builtin_offsetof (struct malloc_chunk, fd_nextsize))+((2 * (sizeof(size_t))) - 1)) & ~((2 * (sizeof(size_t))) - 1))) && ((old_top)->size & 0x1) && ((unsigned long)old_end & pagemask) == 0)' failed.

backtrace:      Text file, 12221 bytes
dso_list:       Text file, 4668 bytes
maps:           Text file, 12013 bytes

build_ids:
:9d63dc2ec7319f8f859631fe02b108b896da5450
:e86c829bf8553d6b593dbd8c4df0957268dc8328
:96b666a7f6d7a80ea6f9aef54f0cdd0f6190c058
:2e2f7394d8e0b50fc9b659071fe482e3e4fe4fdb
:92418f7b783e29ab8440148e3fb0cbcfb8bb354a
:92a21a55d76b5396cd54af99b1a6b1e0bf4a0bc4
:1002abe0291e2b40a073f1d82ed0322e82a760dc
:3aed71a6e79a28101ca36e6e9b3e8e053b73421a
:9e557521cbc1bfa5f60a7be1b5a6bda768ee5f7f
:4946e9a1780f079c79bd497c0c9ff250b976fe15
:bf0a36dd7bb8edf9bdb86ebcf5c1cf12543a78ca
:654235959ac7679b479cbee874a8d86a26902b4e
:d2ef4967ab01e3014987c103172ad4b15b7816dc
:66bde8f1c5ea0505d428ab205352524e2ccfa7ac
:d31267db07bb7f102633c43adc7b083b45aef1d5
:6e5b569d683e29274c7b273d3a3aabdd0b51deb6
:917b19e34a4e653ea2f5151867bfb15e683a008d
:0f1117e138e0e5f1f71ad0a869433e7c5b9eb2ff
:0668cb94095cf73bc5ac05432fb1024186d29455
:fa52c94417eb9760265bfd6381ecece7afe41c56
:6fdbfcd9e4f3f1a2e5346a39cc05ed4104315ccf
:a8048f4726308b3a7e3432c56057dd593bf7013a
:180d6b9c1f1ebd392547cba3ee72a3b34ec17177
:73328c8f8ee033e02433c4baf5aa4835275cd93c
:0c42d41b807c8cf7bcfa07558b3c29014947986e
:c57db174fd95c10c543e144740e1ca144041ee71
:7e645e46542edda59c493361a82e3b992a26e1c2
:39bcc6ecb98ccc46e604f698283165ac4c480156
:c61e277da35560d3fe2899a1f32c1d9cf2ae9b3e
:2ceafbe60ad3978e0d071011b82e0325fc43a106
:7b2c4d1f67d5f8fa494efea89d8790b8367d0434
:15bab279752ad8e30f901abae77bcb1ed1f38977
:c650dfe2f7ead26f8e48c2433d71b5baf7b3a862
:c40ca5d78f7f5324884265a76b4e6c6c3b09a26f
:d9c27be5784e4a5fc0b40a13e29932d68e47753d
:1e433d5156c8decab4ff0f1125eefb5a5bef4622
:9420467d89dfb7f3e4dad350ca3d5725ab6f7ca0
:2effa52adc086ca53a55273afe9b415e8bd46fc9
:988131751cba6acdb670ad1d73df4cddd91404cd
:798697a352bae4178953ba502fb04f33dd0ed987
:c426419184fb3dcbe313f2b886f0228b7effc9ea
:8e4c3586ead4b9d9964684cd9a281edc025bd771
:861a77ab9a119a2c5a1231ef306cdb56dbb739e8
:030b651bfa42f57fde8249f7c6d3ece6d1f57343
:333f04d80ad25c22c3d8c938f7318617ff063917
:e42d500dc9e803be62453540b4c81a12e96a006a
:b9c6d61cd56469fa0c270cc3432e4496f020c625
:dfc9d57f13e20a33b84e21e6061f7625d313e42c
:0351a659bc0812678c67f62af1f802a5f367befc
:70ec0be07448920a83c0bceafed09d46008e56b1
:51d694820cc687ffcfc56a076d94f9214f7ea08c
:56c1b56c79bc8f1606bb4ae19aecbe40abc56691
:ae15534ba0067272ad8a7be96ba555e6347ae845
:004f998e5feec2d735c51a4801d53ae21cb95d02
:e75791b33ba1bf7f95c2915cee45e8e931993065
:12da4d1dc9764d3990ab6a2def5a88c4687d4550
:d26cd8cc91e61378fcf9d844cdbf7baba1b1b40b
:10cec21724c13b95ec03f00985b0405412817a49
:ad146d778b0325879d5c96652ac86ca8e121057d

environ:
:XDG_VTNR=1
:MPI_INCLUDE=/usr/include/mpich2-i386
:MANPATH=/usr/share/man/mpich2:/usr/share/man:/usr/local/share/man
:SSH_AGENT_PID=1143
:KDE_MULTIHEAD=false
:XDG_SESSION_ID=1
:DM_CONTROL=/var/run/xdmctl
:HOSTNAME=localhost.localdomain
:TERM=xterm
:SHELL=/bin/bash
:XDG_MENU_PREFIX=kde4-
:HISTSIZE=1000
:XDG_SESSION_COOKIE=cdc2d4f67800ccf9a72fb7d00000000a-1332130322.124457-420282794
:XDM_MANAGED=method=classic
:GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/root/.gtkrc-2.0:/root/.gtkrc-2.0-kde4:/root/.kde/share/config/gtkrc-2.0
:KONSOLE_DBUS_SERVICE=:1.84
:SCHRODINGER=/opt/schrodinger
:GTK_RC_FILES=/etc/gtk/gtkrc:/root/.gtkrc:/root/.kde/share/config/gtkrc
:GS_LIB=
:WINDOWID=73400346
:QTDIR=/usr/lib/qt-3.3
:QTINC=/usr/lib/qt-3.3/include
:SHELL_SESSION_ID=f061253d9b47400097c34788900c2291
:KDE_FULL_SESSION=true
:USER=root
:MPI_PYTHON_SITEARCH=/usr/lib/python2.7/site-packages/mpich2
:LD_LIBRARY_PATH=/usr/lib/mpich2/lib
:LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:*.pdf=00;33:*.ps=00;33:*.ps.gz=00;33:*.txt=00;33:*.patch=00;33:*.diff=00;33:*.log=00;33:*.tex=00;33:*.xls=00;33:*.xlsx=00;33:*.ppt=00;33:*.pptx=00;33:*.rtf=00;33:*.doc=00;33:*.docx=00;33:*.odt=00;33:*.ods=00;33:*.odp=00;33:*.xml=00;33:*.epub=00;33:*.abw=00;33:*.html=00;33:*.wpd=00;33:
:SSH_AUTH_SOCK=/tmp/ssh-iTAThyAF1103/agent.1103
:SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/1221,unix/unix:/tmp/.ICE-unix/1221
:MPI_LIB=/usr/lib/mpich2/lib
:DESKTOP_SESSION=default
:PATH=/usr/lib/qt-3.3/bin:/usr/lib/mpich2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/root/bin
:MAIL=/var/spool/mail/root
:MPI_BIN=/usr/lib/mpich2/bin
:MPI_COMPILER=mpich2-i386
:PWD=/usr/local/gromacs/share/1EMB_AllStrand_NoCRO
:_LMFILES_=/etc/modulefiles/mpich2-i386
:LANG=en_US.UTF-8
:KDE_IS_PRELINKED=1
:KDE_SESSION_UID=0
:MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
:LOADEDMODULES=mpich2-i386
:KDEDIRS=/usr
:KONSOLE_DBUS_SESSION=/Sessions/1
:HISTCONTROL=ignoredups
:SSH_ASKPASS=/usr/bin/ksshaskpass
:MPI_SYSCONFIG=/etc/mpich2-i386
:COLORFGBG=15;0
:SHLVL=3
:XDG_SEAT=seat0
:HOME=/root
:KDE_SESSION_VERSION=4
:LANGUAGE=
:MPI_SUFFIX=_mpich2
:XCURSOR_THEME=default
:MPI_MAN=/usr/share/man/mpich2
:LOGNAME=root
:PYTHONPATH=/usr/lib/python2.7/site-packages/mpich2
:QTLIB=/usr/lib/qt-3.3/lib
:DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-vMfb5A0R73,guid=5c67b436036f1f0a2124f1840000001f
:XDG_DATA_DIRS=/usr/share/kde-settings/kde-profile/default/share:/usr/local/share:/usr/share
:MPI_FORTRAN_MOD_DIR=/usr/include/mpich2-i386
:MPI_HOME=/usr/lib/mpich2
:MODULESHOME=/usr/share/Modules
:'LESSOPEN=||/usr/bin/lesspipe.sh %s'
:WINDOWPATH=1
:FLEXLM_DIAGNOSTICS=3
:PROFILEHOME=/usr/local/gromacs/share/1EMB_AllStrand_NoCRO
:XDG_RUNTIME_DIR=/run/user/root
:DISPLAY=:0
:QT_PLUGIN_PATH=/root/.kde/lib/kde4/plugins/:/usr/lib/kde4/plugins/
:LM_LICENSE=@/opt/schrodinger/licens'cmd bash $*`\n}'
:_=/usr/bin/xmgrace

var_log_messages:
:Mar 14 11:23:16 localhost abrt[7419]: Saved core dump of pid 7418 (/usr/bin/xmgrace) to /var/spool/abrt/ccpp-2012-03-14-11:23:16-7418 (1626112 bytes)
:Mar 14 11:25:02 localhost abrt[7620]: Saved core dump of pid 7619 (/usr/bin/xmgrace) to /var/spool/abrt/ccpp-2012-03-14-11:25:02-7619 (1626112 bytes)
:Mar 19 13:46:23 localhost abrt[3658]: Saved core dump of pid 3657 (/usr/bin/xmgrace) to /var/spool/abrt/ccpp-2012-03-19-13:46:23-3657 (1695744 bytes)
Comment 1 Amit Goyal 2012-03-19 05:03:25 UTC 
Created attachment 571005 [details]
File: dso_list
Comment 2 Amit Goyal 2012-03-19 05:03:26 UTC 
Created attachment 571006 [details]
File: maps
Comment 3 Amit Goyal 2012-03-19 05:03:28 UTC 
Created attachment 571007 [details]
File: backtrace
Comment 4 Andrzej Kuzniar 2012-03-22 18:12:31 UTC 
Hello,

This application can not launch under Fedora. I have no idea why it is, so decided to report existing situation as a bug.

Andrzej Kuzniar



backtrace_rating: 4
Package: grace-5.1.22-9.fc16
OS Release: Fedora release 16 (Verne)
Comment 5 Andrzej Kuzniar 2012-03-22 18:12:35 UTC 
Created attachment 572056 [details]
File: backtrace
Comment 6 José Matos 2012-11-26 14:34:58 UTC 
Does this problem still persists?

What is the content of /etc/grace/FontDataBase?
Comment 7 Fedora Update System 2012-11-26 20:37:38 UTC 
grace-5.1.23-1.fc18 has been submitted as an update for Fedora 18.
https://admin.fedoraproject.org/updates/grace-5.1.23-1.fc18
Comment 8 Fedora Update System 2012-11-26 20:39:22 UTC 
grace-5.1.23-1.fc17 has been submitted as an update for Fedora 17.
https://admin.fedoraproject.org/updates/grace-5.1.23-1.fc17
Comment 9 Fedora Update System 2012-11-26 20:40:26 UTC 
grace-5.1.23-1.fc16 has been submitted as an update for Fedora 16.
https://admin.fedoraproject.org/updates/grace-5.1.23-1.fc16
Comment 10 Fedora Update System 2012-11-27 09:50:14 UTC 
Package grace-5.1.23-1.fc18:
* should fix your issue,
* was pushed to the Fedora 18 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing grace-5.1.23-1.fc18'
as soon as you are able to.
Please go to the following url:
https://admin.fedoraproject.org/updates/FEDORA-2012-19107/grace-5.1.23-1.fc18
then log in and leave karma (feedback).
Comment 11 Fedora Update System 2012-12-01 09:45:59 UTC 
grace-5.1.23-1.fc18 has been pushed to the Fedora 18 stable repository.  If problems still persist, please make note of it in this bug report.
Comment 12 Fedora Update System 2012-12-06 07:01:13 UTC 
grace-5.1.23-1.fc16 has been pushed to the Fedora 16 stable repository.  If problems still persist, please make note of it in this bug report.
Comment 13 Fedora Update System 2012-12-06 07:04:47 UTC 
grace-5.1.23-1.fc17 has been pushed to the Fedora 17 stable repository.  If problems still persist, please make note of it in this bug report.