Bug 821501

Summary:	Missing primer3_config directory
Product:	[Fedora] Fedora	Reporter:	Rasmus Ory Nielsen <ron>
Component:	primer3	Assignee:	Pierre-YvesChibon <pingou>
Status:	CLOSED ERRATA	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	medium	Docs Contact:
Priority:	unspecified
Version:	16	CC:	pingou
Target Milestone:	---
Target Release:	---
Hardware:	x86_64
OS:	Linux
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Fixed In Version:		Doc Type:	Bug Fix
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2012-06-03 23:35:08 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:

Description Rasmus Ory Nielsen 2012-05-14 17:36:29 UTC

User-Agent:       Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/534.57.2 (KHTML, like Gecko) Version/5.1.7 Safari/534.57.2

The directory 'primer3_config' is missing from the package.  This means that using PRIMER_THERMODYNAMIC_ALIGNMENT (which is now default) will fail.

Reproducible: Always

Steps to Reproduce:
$ primer3_core < /usr/share/doc/primer3-2.3.0/example

Actual Results:  
The program designs no primers. Output contains the 'PRIMER_ERROR' - see below.

SEQUENCE_ID=example
[deleted some lines]..
PRIMER_ERROR=thermodynamic approach chosen, but path to thermodynamic parameters not specified


Expected Results:  
No 'PRIMER_ERROR' errors

Comment 1 Pierre-YvesChibon 2012-05-15 15:00:04 UTC

Could you check with the new version of primer3 (yum update primer3 --enablerepo=updates-testing) ?

Thanks!

Comment 2 Pierre-YvesChibon 2012-05-15 15:33:37 UTC

The version 2.3.2-2 which I just submitted to updates-testing should fix the problem :-)

Comment 3 Rasmus Ory Nielsen 2012-05-15 20:15:21 UTC

Thanks! Indeed the 2.3.2-2 fixes the problem.

Comment 4 Fedora Update System 2012-05-15 20:49:48 UTC

primer3-2.3.2-2.fc17 has been submitted as an update for Fedora 17.
https://admin.fedoraproject.org/updates/FEDORA-2012-6472/primer3-2.3.2-2.fc17

Comment 5 Fedora Update System 2012-06-03 23:35:08 UTC

primer3-2.3.2-2.fc17 has been pushed to the Fedora 17 stable repository.  If problems still persist, please make note of it in this bug report.