Bug 821501 - Missing primer3_config directory
Summary: Missing primer3_config directory
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: primer3
Version: 16
Hardware: x86_64
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Pierre-YvesChibon
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2012-05-14 17:36 UTC by Rasmus Ory Nielsen
Modified: 2012-06-03 23:35 UTC (History)
1 user (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2012-06-03 23:35:08 UTC
Type: ---
Embargoed:

Attachments (Terms of Use)

Description Rasmus Ory Nielsen 2012-05-14 17:36:29 UTC 
User-Agent:       Mozilla/5.0 (Macintosh; Intel Mac OS X 10_7_4) AppleWebKit/534.57.2 (KHTML, like Gecko) Version/5.1.7 Safari/534.57.2

The directory 'primer3_config' is missing from the package.  This means that using PRIMER_THERMODYNAMIC_ALIGNMENT (which is now default) will fail.

Reproducible: Always

Steps to Reproduce:
$ primer3_core < /usr/share/doc/primer3-2.3.0/example

Actual Results:  
The program designs no primers. Output contains the 'PRIMER_ERROR' - see below.

SEQUENCE_ID=example
[deleted some lines]..
PRIMER_ERROR=thermodynamic approach chosen, but path to thermodynamic parameters not specified


Expected Results:  
No 'PRIMER_ERROR' errors
Comment 1 Pierre-YvesChibon 2012-05-15 15:00:04 UTC 
Could you check with the new version of primer3 (yum update primer3 --enablerepo=updates-testing) ?

Thanks!
Comment 2 Pierre-YvesChibon 2012-05-15 15:33:37 UTC 
The version 2.3.2-2 which I just submitted to updates-testing should fix the problem :-)
Comment 3 Rasmus Ory Nielsen 2012-05-15 20:15:21 UTC 
Thanks! Indeed the 2.3.2-2 fixes the problem.
Comment 4 Fedora Update System 2012-05-15 20:49:48 UTC 
primer3-2.3.2-2.fc17 has been submitted as an update for Fedora 17.
https://admin.fedoraproject.org/updates/FEDORA-2012-6472/primer3-2.3.2-2.fc17
Comment 5 Fedora Update System 2012-06-03 23:35:08 UTC 
primer3-2.3.2-2.fc17 has been pushed to the Fedora 17 stable repository.  If problems still persist, please make note of it in this bug report.
Note You need to log in before you can comment on or make changes to this bug.