Bug 989141

Summary: [abrt] coot-0.7-1.20120929svn4458.fc18: __fopen_internal: Process /usr/bin/coot-real was killed by signal 6 (SIGABRT)
Product: [Fedora] Fedora Reporter: Kim Woodle <kwoodle>
Component: cootAssignee: Tim Fenn <tim.fenn>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: 19CC: tim.fenn
Target Milestone: ---   
Target Release: ---   
Hardware: x86_64   
OS: Unspecified   
Whiteboard: abrt_hash:5787ea80ad76b0c48e3ace31796a78eb6eeb0c8c
Fixed In Version: coot-0.7-5.20120929svn4458.fc19 Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2013-08-21 00:11:07 UTC Type: ---
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Attachments:
Description Flags
File: backtrace
none
File: cgroup
none
File: core_backtrace
none
File: dso_list
none
File: environ
none
File: limits
none
File: maps
none
File: open_fds
none
File: proc_pid_status
none
File: var_log_messages none

Description Kim Woodle 2013-07-27 20:55:31 UTC 
Version-Release number of selected component:
coot-0.7-1.20120929svn4458.fc18

Additional info:
reporter:       libreport-2.1.5
backtrace_rating: 4
cmdline:        /usr/bin/coot-real
crash_function: __fopen_internal
executable:     /usr/bin/coot-real
kernel:         3.9.9-302.fc19.x86_64
runlevel:       N 5
uid:            1000

Truncated backtrace:
Thread no. 1 (7 frames)
 #6 __fopen_internal at iofopen.c:73
 #7 CFile::reset at mmdb/file_.cpp:357
 #8 isMMDBBIN at mmdb/mmdb_file.cpp:2938
 #9 CMMDBFile::ReadCoorFile at mmdb/mmdb_file.cpp:613
 #10 get_atom_selection at mmdb.cc:146
 #11 graphics_info_t::read_standard_residues at graphics-info-mutate.cc:292
 #12 graphics_info_t::init at graphics-info.h:941
Comment 1 Kim Woodle 2013-07-27 20:55:34 UTC 
Created attachment 779211 [details]
File: backtrace
Comment 2 Kim Woodle 2013-07-27 20:55:37 UTC 
Created attachment 779212 [details]
File: cgroup
Comment 3 Kim Woodle 2013-07-27 20:55:39 UTC 
Created attachment 779213 [details]
File: core_backtrace
Comment 4 Kim Woodle 2013-07-27 20:55:41 UTC 
Created attachment 779214 [details]
File: dso_list
Comment 5 Kim Woodle 2013-07-27 20:55:44 UTC 
Created attachment 779215 [details]
File: environ
Comment 6 Kim Woodle 2013-07-27 20:55:46 UTC 
Created attachment 779216 [details]
File: limits
Comment 7 Kim Woodle 2013-07-27 20:55:51 UTC 
Created attachment 779217 [details]
File: maps
Comment 8 Kim Woodle 2013-07-27 20:55:53 UTC 
Created attachment 779218 [details]
File: open_fds
Comment 9 Kim Woodle 2013-07-27 20:55:56 UTC 
Created attachment 779219 [details]
File: proc_pid_status
Comment 10 Kim Woodle 2013-07-27 20:55:58 UTC 
Created attachment 779220 [details]
File: var_log_messages
Comment 11 Fedora Update System 2013-08-12 08:18:20 UTC 
coot-0.7-5.20120929svn4458.fc19 has been submitted as an update for Fedora 19.
https://admin.fedoraproject.org/updates/coot-0.7-5.20120929svn4458.fc19
Comment 12 Fedora Update System 2013-08-12 18:00:05 UTC 
Package coot-0.7-5.20120929svn4458.fc19:
* should fix your issue,
* was pushed to the Fedora 19 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing coot-0.7-5.20120929svn4458.fc19'
as soon as you are able to.
Please go to the following url:
https://admin.fedoraproject.org/updates/FEDORA-2013-14664/coot-0.7-5.20120929svn4458.fc19
then log in and leave karma (feedback).
Comment 13 Fedora Update System 2013-08-21 00:11:07 UTC 
coot-0.7-5.20120929svn4458.fc19 has been pushed to the Fedora 19 stable repository.  If problems still persist, please make note of it in this bug report.