Bug 989141 - [abrt] coot-0.7-1.20120929svn4458.fc18: __fopen_internal: Process /usr/bin/coot-real was killed by signal 6 (SIGABRT)
Summary: [abrt] coot-0.7-1.20120929svn4458.fc18: __fopen_internal: Process /usr/bin/co...
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: coot
Version: 19
Hardware: x86_64
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Tim Fenn
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard: abrt_hash:5787ea80ad76b0c48e3ace31796...
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2013-07-27 20:55 UTC by Kim Woodle
Modified: 2013-08-21 00:11 UTC (History)
1 user (show)

Fixed In Version: coot-0.7-5.20120929svn4458.fc19
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2013-08-21 00:11:07 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)
File: backtrace (58.39 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: cgroup (140 bytes, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: core_backtrace (1.67 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: dso_list (13.95 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: environ (2.01 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: limits (1.29 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: maps (65.47 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: open_fds (266 bytes, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: proc_pid_status (935 bytes, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details
File: var_log_messages (1.33 KB, text/plain)
2013-07-27 20:55 UTC, Kim Woodle
no flags Details

Description Kim Woodle 2013-07-27 20:55:31 UTC
Version-Release number of selected component:
coot-0.7-1.20120929svn4458.fc18

Additional info:
reporter:       libreport-2.1.5
backtrace_rating: 4
cmdline:        /usr/bin/coot-real
crash_function: __fopen_internal
executable:     /usr/bin/coot-real
kernel:         3.9.9-302.fc19.x86_64
runlevel:       N 5
uid:            1000

Truncated backtrace:
Thread no. 1 (7 frames)
 #6 __fopen_internal at iofopen.c:73
 #7 CFile::reset at mmdb/file_.cpp:357
 #8 isMMDBBIN at mmdb/mmdb_file.cpp:2938
 #9 CMMDBFile::ReadCoorFile at mmdb/mmdb_file.cpp:613
 #10 get_atom_selection at mmdb.cc:146
 #11 graphics_info_t::read_standard_residues at graphics-info-mutate.cc:292
 #12 graphics_info_t::init at graphics-info.h:941

Comment 1 Kim Woodle 2013-07-27 20:55:34 UTC
Created attachment 779211 [details]
File: backtrace

Comment 2 Kim Woodle 2013-07-27 20:55:37 UTC
Created attachment 779212 [details]
File: cgroup

Comment 3 Kim Woodle 2013-07-27 20:55:39 UTC
Created attachment 779213 [details]
File: core_backtrace

Comment 4 Kim Woodle 2013-07-27 20:55:41 UTC
Created attachment 779214 [details]
File: dso_list

Comment 5 Kim Woodle 2013-07-27 20:55:44 UTC
Created attachment 779215 [details]
File: environ

Comment 6 Kim Woodle 2013-07-27 20:55:46 UTC
Created attachment 779216 [details]
File: limits

Comment 7 Kim Woodle 2013-07-27 20:55:51 UTC
Created attachment 779217 [details]
File: maps

Comment 8 Kim Woodle 2013-07-27 20:55:53 UTC
Created attachment 779218 [details]
File: open_fds

Comment 9 Kim Woodle 2013-07-27 20:55:56 UTC
Created attachment 779219 [details]
File: proc_pid_status

Comment 10 Kim Woodle 2013-07-27 20:55:58 UTC
Created attachment 779220 [details]
File: var_log_messages

Comment 11 Fedora Update System 2013-08-12 08:18:20 UTC
coot-0.7-5.20120929svn4458.fc19 has been submitted as an update for Fedora 19.
https://admin.fedoraproject.org/updates/coot-0.7-5.20120929svn4458.fc19

Comment 12 Fedora Update System 2013-08-12 18:00:05 UTC
Package coot-0.7-5.20120929svn4458.fc19:
* should fix your issue,
* was pushed to the Fedora 19 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing coot-0.7-5.20120929svn4458.fc19'
as soon as you are able to.
Please go to the following url:
https://admin.fedoraproject.org/updates/FEDORA-2013-14664/coot-0.7-5.20120929svn4458.fc19
then log in and leave karma (feedback).

Comment 13 Fedora Update System 2013-08-21 00:11:07 UTC
coot-0.7-5.20120929svn4458.fc19 has been pushed to the Fedora 19 stable repository.  If problems still persist, please make note of it in this bug report.


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