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Description of problem: When importing h5py into python, warnings occur. Version-Release number of selected component (if applicable): h5py-1.3.1-6.el6.x86_64 python-2.6.6-37.el6_4.x86_64 hdf5-1.8.5.patch1-7.el6.x86_64 How reproducible: Steps to Reproduce: 1. start python 2. import h5py Actual results: Python 2.6.6 (r266:84292, May 27 2013, 05:35:12) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import h5py /usr/lib64/python2.6/site-packages/h5py/__init__.py:24: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility import h5 /usr/lib64/python2.6/site-packages/h5py/__init__.py:34: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility import h5, h5a, h5d, h5f, h5fd, h5g, h5l, h5o, h5i, h5p, h5r, h5s, h5t, h5z >>> Expected results: a quiet import of the module Additional info: The warning seems to be only a warning, execution continues and the python module is usable.
Hi Steve, Any progress on this? I'm experiencing the issue. Package versions involved: h5py-1.3.1-6.el6.x86_64 hdf5-1.8.5.patch1-7.el6.x86_64 numpy-1.4.1.9.el6.x86_64 python-2.6.6-52.el6.x86_64 Temporary work around was to downgrade numpy to numpy-1.3.0-6.2.el6.x86_64.
h5py-1.3.1-7.el6 has been submitted as an update to Fedora EPEL 6. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2017-64d71d6bf8
Version 1.3.1-7 from bodhi seems to do the job.
h5py-1.3.1-7.el6 has been pushed to the Fedora EPEL 6 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2017-64d71d6bf8
h5py-1.3.1-7.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report.