Description of problem: *********************** When patch updates modules that contain natives, patching mechanism detects conflicts and doesn't allow to install patch. Version-Release number of selected component (if applicable): *********************** EAP 6.2.0.GA Steps to Reproduce: *********************** 1. unzip eap 2. install natives 3. ./bin/jboss-cli.sh '--command=patch apply path_to_cp1' Actual results: *********************** Conflicts detected: org.hornetq:main, org.jboss.as.web:main Use the --override or --preserve arguments in order to resolve the conflict. Expected results: *********************** Patch is successfully installed. Additional info: *********************** Workaround is to apply patch with --override-modules, but this disables natives. Similar issue with installer distribution of eap: https://bugzilla.redhat.com/show_bug.cgi?id=1065830