Bug 1074313 - [abrt] R-core: strcmp(): R killed by SIGSEGV
Summary: [abrt] R-core: strcmp(): R killed by SIGSEGV
Keywords:
Status: CLOSED NOTABUG
Alias: None
Product: Fedora
Classification: Fedora
Component: R
Version: 20
Hardware: x86_64
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Tom "spot" Callaway
QA Contact: Fedora Extras Quality Assurance
URL: https://retrace.fedoraproject.org/faf...
Whiteboard: abrt_hash:2cf28217d37d424df49348f310c...
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2014-03-09 16:47 UTC by Gwendal
Modified: 2014-06-24 19:42 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2014-06-24 19:42:46 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)
File: backtrace (78.46 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: cgroup (172 bytes, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: core_backtrace (15.48 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: dso_list (3.04 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: environ (3.34 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: limits (1.29 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: maps (15.01 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: open_fds (147 bytes, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: proc_pid_status (940 bytes, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details
File: var_log_messages (21.00 KB, text/plain)
2014-03-09 16:48 UTC, Gwendal
no flags Details

Description Gwendal 2014-03-09 16:47:57 UTC
Description of problem:
I _think_ that it may be linked to filtering a dataframe with wrong arguments.

More precisely, this :
value = data[data$A==a & data$B==b, c('D'), data$C==c]

Instead of this :
value = data[data$A==a & data$B==b & data$C==c, c('D')]

Version-Release number of selected component:
R-core-3.0.2-1.fc20

Additional info:
reporter:       libreport-2.1.12
backtrace_rating: 4
cmdline:        /usr/lib64/R/bin/exec/R --no-save --args results.csv
crash_function: strcmp
executable:     /usr/lib64/R/bin/exec/R
kernel:         3.13.5-202.fc20.x86_64
runlevel:       N 5
type:           CCpp
uid:            1000

Truncated backtrace:
Thread no. 1 (10 frames)
 #0 strcmp at ../sysdeps/x86_64/strcmp.S:1983
 #1 Rf_StringTrue at util.c:389
 #2 Rf_LogicalFromString at coerce.c:111
 #3 Rf_asLogical at coerce.c:1632
 #4 asLogicalNoNA at eval.c:1292
 #5 bcEval at eval.c:4236
 #6 Rf_eval at eval.c:545
 #7 Rf_applyClosure at eval.c:1019
 #8 applyMethod at objects.c:126
 #9 Rf_usemethod at objects.c:371

Comment 1 Gwendal 2014-03-09 16:48:02 UTC
Created attachment 872428 [details]
File: backtrace

Comment 2 Gwendal 2014-03-09 16:48:04 UTC
Created attachment 872429 [details]
File: cgroup

Comment 3 Gwendal 2014-03-09 16:48:06 UTC
Created attachment 872430 [details]
File: core_backtrace

Comment 4 Gwendal 2014-03-09 16:48:07 UTC
Created attachment 872431 [details]
File: dso_list

Comment 5 Gwendal 2014-03-09 16:48:09 UTC
Created attachment 872432 [details]
File: environ

Comment 6 Gwendal 2014-03-09 16:48:11 UTC
Created attachment 872433 [details]
File: limits

Comment 7 Gwendal 2014-03-09 16:48:13 UTC
Created attachment 872434 [details]
File: maps

Comment 8 Gwendal 2014-03-09 16:48:14 UTC
Created attachment 872435 [details]
File: open_fds

Comment 9 Gwendal 2014-03-09 16:48:16 UTC
Created attachment 872436 [details]
File: proc_pid_status

Comment 10 Gwendal 2014-03-09 16:48:19 UTC
Created attachment 872437 [details]
File: var_log_messages

Comment 11 Tom "spot" Callaway 2014-05-12 19:48:29 UTC
R 3.1.0 is in testing (or it will be very soon). Can you please try to reproduce this bug there?

Comment 12 Tom "spot" Callaway 2014-06-24 19:42:46 UTC
Please reopen if this is reproducable in 3.1.0.


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