Description of problem: pypar fails to load Version-Release number of selected component (if applicable): [spimcmw@nanlnx1 ~]0% rpm -q openmpi pypar-common pypar-openmpi openmpi-1.5.4-2.el6.x86_64 pypar-common-2.1.4_94-3.el6.noarch pypar-openmpi-2.1.4_94-3.el6.x86_64 [spimcmw@nanlnx1 ~]0% How reproducible: Every time. Steps to Reproduce: [spimcmw@nanlnx15 ~]0% python Python 2.6.6 (r266:84292, Nov 21 2013, 12:39:37) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import pypar Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/usr/lib64/python2.6/site-packages/openmpi/pypar/__init__.py", line 33, in <module> from pypar import * File "/usr/lib64/python2.6/site-packages/openmpi/pypar/pypar.py", line 863, in <module> mpi = CDLL('libmpi.so.0', RTLD_GLOBAL) File "/usr/lib64/python2.6/ctypes/__init__.py", line 353, in __init__ self._handle = _dlopen(self._name, mode) OSError: libmpi.so.0: cannot open shared object file: No such file or directory >>> Actual results: pypar fails to import Expected results: pypar should import Additional info: libmpi.so.0 does not exist: [spimcmw@nanlnx15 ~]0% ls -l /usr/lib64/openmpi/lib/libmpi.so* lrwxrwxrwx. 1 root root 15 Feb 21 10:59 /usr/lib64/openmpi/lib/libmpi.so -> libmpi.so.1.0.2 lrwxrwxrwx. 1 root root 15 Feb 21 10:59 /usr/lib64/openmpi/lib/libmpi.so.1 -> libmpi.so.1.0.2 -rwxr-xr-x. 1 root root 1395848 Nov 25 19:20 /usr/lib64/openmpi/lib/libmpi.so.1.0.2 However libmpi.so.0 is not linked against: [spimcmw@nanlnx15 ~]0% ldd /usr/lib64/python2.6/site-packages/openmpi/pypar/mpiext.so linux-vdso.so.1 => (0x00007fff39788000) libmpi.so.1 => /usr/lib64/openmpi/lib/libmpi.so.1 (0x00007fa32f205000) libdl.so.2 => /lib64/libdl.so.2 (0x00007fa32efe9000) libpython2.6.so.1.0 => /usr/lib64/libpython2.6.so.1.0 (0x00007fa32ec43000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fa32ea26000) libc.so.6 => /lib64/libc.so.6 (0x00007fa32e691000) libnsl.so.1 => /lib64/libnsl.so.1 (0x00007fa32e478000) libutil.so.1 => /lib64/libutil.so.1 (0x00007fa32e275000) libm.so.6 => /lib64/libm.so.6 (0x00007fa32dff0000) libltdl.so.7 => /usr/lib64/libltdl.so.7 (0x00007fa32dde7000) /lib64/ld-linux-x86-64.so.2 (0x00000036ae800000) [spimcmw@nanlnx15 ~]0% /usr/lib64/python2.6/site-packages/openmpi/pypar/pypar.py contains: # Work around bug in OpenMPI (December 2009): # https://bugs.launchpad.net/ubuntu/+source/petsc4py/+bug/232036 from ctypes import * mpi = CDLL('libmpi.so.0', RTLD_GLOBAL) # End work around Update libmpi.so.0 to libmpi.so.1 and it works: [spimcmw@nanlnx15 ~]0% python Python 2.6.6 (r266:84292, Nov 21 2013, 12:39:37) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import pypar Pypar (version 2.1.4) initialised MPI OK with 1 processors >>>
Does it work if you remove the # Work around bug in OpenMPI (December 2009): # https://bugs.launchpad.net/ubuntu/+source/petsc4py/+bug/232036 from ctypes import * mpi = CDLL('libmpi.so.0', RTLD_GLOBAL) # End work around section altogether?
I did try that, it generates the followimg error: [spimcmw@cnsdesk1 ~]0% python Python 2.6.6 (r266:84292, Nov 21 2013, 12:39:37) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import pypar python: symbol lookup error: /usr/lib64/openmpi/lib/openmpi/mca_paffinity_hwloc.so: undefined symbol: mca_base_param_reg_int [spimcmw@cnsdesk1 ~]127%
This is the same issue as in bug #754262. I'm syncing the EPEL6 branch with rawhide.
pypar-2.1.5_108-1.el6 has been submitted as an update for Fedora EPEL 6. https://admin.fedoraproject.org/updates/pypar-2.1.5_108-1.el6
Package pypar-2.1.5_108-1.el6: * should fix your issue, * was pushed to the Fedora EPEL 6 testing repository, * should be available at your local mirror within two days. Update it with: # su -c 'yum update --enablerepo=epel-testing pypar-2.1.5_108-1.el6' as soon as you are able to. Please go to the following url: https://admin.fedoraproject.org/updates/FEDORA-EPEL-2014-1019/pypar-2.1.5_108-1.el6 then log in and leave karma (feedback).
pypar-2.1.5_108-1.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report.