Bug 1108103 - FTBFS: several unit tests fail on ppc64
Summary: FTBFS: several unit tests fail on ppc64
Alias: None
Product: Fedora
Classification: Fedora
Component: openbabel
Version: rawhide
Hardware: ppc64
OS: Linux
Target Milestone: ---
Assignee: Dominik 'Rathann' Mierzejewski
QA Contact: Fedora Extras Quality Assurance
Depends On:
Blocks: PPCTracker
TreeView+ depends on / blocked
Reported: 2014-06-11 12:55 UTC by Karsten Hopp
Modified: 2015-02-23 08:03 UTC (History)
6 users (show)

Fixed In Version: openbabel-2.3.2-11.fc21
Doc Type: Bug Fix
Doc Text:
Clone Of:
Last Closed: 2015-02-23 08:03:29 UTC

Attachments (Terms of Use)
patch + spec changeset (4.53 KB, patch)
2015-01-27 10:12 UTC, Marcin Juszkiewicz
no flags Details | Diff

Description Karsten Hopp 2014-06-11 12:55:34 UTC
Description of problem:
10/60 Test #10: rotor_Test .......................***Failed  Error regular expression found in output. Regex=[FAIL]  0.10 sec
/builddir/build/BUILD/openbabel-2.3.2/test/rotortest.cpp:123: IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 180.0, 1.0) (FAIL)

      Start 23: inchiSteffen_PubChem.smi_Test
23/60 Test #23: inchiSteffen_PubChem.smi_Test ....***Timeout 1500.01 sec
*** Open Babel Warning  in InChI code
  #8 :Salt was disconnected;
*** Open Babel Warning  in InChI code
  #30 :Salt was disconnected;

      Start 54: pytest_sym
54/60 Test #54: pytest_sym .......................***Timeout 1500.03 sec

95% tests passed, 3 tests failed out of 60
Total Test time (real) = 3065.64 sec
The following tests FAILED:
	 10 - rotor_Test (Failed)
	 23 - inchiSteffen_PubChem.smi_Test (Timeout)
	 54 - pytest_sym (Timeout)
Errors while running CTest
make: *** [test] Error 8

Version-Release number of selected component (if applicable):

How reproducible:

Steps to Reproduce:
1. ppc-koji build --scratch f21 openbabel-2.3.2-4.fc21.src.rpm

Actual results:

Expected results:

Additional info:

Comment 1 Michel Normand 2014-08-27 11:37:23 UTC
this bug 1108103  (on rawhide) seems to be a duplicate of 1094513 (epel7)
I do not know if we really want to set as duplicate.

Comment 2 Karsten Hopp 2014-09-11 13:48:05 UTC
rotor_test fails with
/builddir/build/BUILD/openbabel-2.3.2/test/rotortest.cpp:126: IsNear(RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates()), 180.0, 1.0) (FAIL)

RAD_TO_DEG * rotor.CalcTorsion(mol->GetCoordinates())  is -179.974 on ppc64 which hints at a sign error somewhere.

Comment 3 Susi Lehtola 2014-09-11 18:28:54 UTC
To me it just looks like the test is broken. -179.974 degrees is equivalent to 180.026 degrees, which is within the given tolerance (which is presumably 1.0 degrees).

Comment 4 Susi Lehtola 2014-09-11 18:47:14 UTC
Filed https://sourceforge.net/p/openbabel/bugs/945/

Comment 5 Marcin Juszkiewicz 2015-01-27 09:28:09 UTC
https://sourceforge.net/p/openbabel/bugs/927/ was filed for AArch64

#1094513 is same bug

Comment 6 Marcin Juszkiewicz 2015-01-27 10:12:50 UTC
Created attachment 984583 [details]
patch + spec changeset

This patch merges arm and ppc64/s390 patches which disable failing tests and then enables it also for aarch64.

Comment 7 Dominik 'Rathann' Mierzejewski 2015-01-27 14:28:56 UTC
Thanks, Marcin. Fix applied to rawhide and built.

Comment 8 Fedora Update System 2015-02-05 08:44:19 UTC
openbabel-2.3.2-11.fc21 has been submitted as an update for Fedora 21.

Comment 9 Fedora Update System 2015-02-06 04:00:54 UTC
Package openbabel-2.3.2-11.fc21:
* should fix your issue,
* was pushed to the Fedora 21 testing repository,
* should be available at your local mirror within two days.
Update it with:
# su -c 'yum update --enablerepo=updates-testing openbabel-2.3.2-11.fc21'
as soon as you are able to.
Please go to the following url:
then log in and leave karma (feedback).

Comment 10 Fedora Update System 2015-02-23 08:03:29 UTC
openbabel-2.3.2-11.fc21 has been pushed to the Fedora 21 stable repository.  If problems still persist, please make note of it in this bug report.

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