Bug 1123550 - Review Request: infernal - An implementation of Covariance Models
Summary: Review Request: infernal - An implementation of Covariance Models
Keywords:
Status: NEW
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Nobody's working on this, feel free to take it
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard: NotReady
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2014-07-26 08:11 UTC by Christopher Meng
Modified: 2014-07-26 08:13 UTC (History)
1 user (show)

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed:


Attachments (Terms of Use)

Description Christopher Meng 2014-07-26 08:11:37 UTC
Spec URL: http://us-la.cicku.me/infernal.spec
SRPM URL: http://us-la.cicku.me/infernal-1.1.1-1.fc22.src.rpm
Description: Infernal is an implementation of covariance models (CMs), which are
statistical models of RNA secondary structure and sequence consensus.
You give Infernal a multiple sequence alignment of a conserved
structural RNA family, annotated with the consensus secondary
structure. The "cmbuild" program builds a statistical profile of your
alignment. That CM can be used as a query in a database search to find
more homologs of your RNAs (the "cmsearch" program). You can also use
a CM of a representative alignment of your sequence family to create a
larger consensus alignment of any number of RNAs (the "cmalign"
program). Infernal is the software engine underlying the Rfam RNA
database (http://rfam.janelia.org).
Fedora Account System Username: cicku

Comment 1 Christopher Meng 2014-07-26 08:13:01 UTC
I just got needs of the MPI, so I will fix it later when "Ready" comes.

I also need to scratch a build for non-x86 arch as it uses SIMD feature.


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