Latest upstream release: 1.0 Current version/release in Fedora Rawhide: 0.1.19-5.fc21 URL: http://sourceforge.net/api/file/index/project-name/samtools/mtime/desc/limit/200/rss Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring
Latest upstream release: 1.2 Current version/release in Fedora Rawhide: 0.1.19-6.fc22 URL: http://sourceforge.net/api/file/index/project-name/samtools/mtime/desc/limit/200/rss Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Soon this service will be implemented by a new system: https://release-monitoring.org/ It will require to manage monitored projects via a new web interface. Please make yourself familiar with the new system to ease the transition.
This package has changed ownership in the Fedora Package Database. Reassigning to the new owner of this component.
Is there a maintainer for this package now? The last message indicates that the package ownership has changed but a samtools-1.2 build is still not available according to https://apps.fedoraproject.org/packages/samtools/overview/. samtools-1.3 has since been released and I would be willing to nominate myself as a package maintainer.
Yes, I'm looking after this package, but haven't been able to do this update yet. There are some historical problems to do with bundling that I've not managed to fix cleanly yet, so any help is certainly appreciated.
Aha! No worries, I just wasn't sure whether we were looking for a new maintainer (mostly to afford me the excuse to learn the ropes). Would be happy to help if I can.
I have opened a package review request for my attempt at packaging htslib: https://bugzilla.redhat.com/show_bug.cgi?id=1326504.
Latest upstream release: 1.3.1 Current version/release in rawhide: 0.1.19-9.fc24 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Patching or scratch build for samtools-0.1.19 failed.
Created attachment 1149949 [details] Rebase-helper rebase-helper-debug.log log file. See for details and report the eventual error to rebase-helper https://github.com/phracek/rebase-helper/issues.
Following patches has been deleted: ['samtools-0.1.14-soname.patch', 'samtools-0.1.19-faidx_fetch_seq2.patch', 'samtools-0.1.19-R-fixes.patch']
Following patches has been unapplied: ['samtools-0.1.14-soname.patch', 'samtools-0.1.19-faidx_fetch_seq2.patch', 'samtools-0.1.19-R-fixes.patch']
Latest upstream release: 1.4 Current version/release in rawhide: 0.1.19-10.fc26 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Created attachment 1262738 [details] [patch] Update to 1.4 (#1131121)
hotness's scratch build of samtools-1.4-1.el7.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=18367477
Latest upstream release: 1.4.1 Current version/release in rawhide: 0.1.19-10.fc26 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Created attachment 1277098 [details] [patch] Update to 1.4.1 (#1131121)
hotness's scratch build of samtools-1.4.1-1.el7.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=19454591
Latest upstream release: 1.5 Current version/release in rawhide: 0.1.19-10.fc26 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Created attachment 1290034 [details] [patch] Update to 1.5 (#1131121)
hotness's scratch build of samtools-1.5-1.el7.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=20076213
Latest upstream release: 1.6 Current version/release in rawhide: 0.1.19-12.fc27 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Created attachment 1332178 [details] [patch] Update to 1.6 (#1131121)
hotness's scratch build of samtools-1.6-1.el7.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=22134180
Latest upstream release: 1.7 Current version/release in rawhide: 0.1.19-12.fc27 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Created attachment 1386726 [details] [patch] Update to 1.7 (#1131121)
hotness's scratch build of samtools-1.7-1.el7.src.rpm for rawhide failed http://koji.fedoraproject.org/koji/taskinfo?taskID=24477512
Latest upstream release: 1.8 Current version/release in rawhide: 0.1.19-13.fc28 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
Latest upstream release: 1.9 Current version/release in rawhide: 0.1.19-13.fc28 URL: http://sourceforge.net/projects/samtools Please consult the package updates policy before you issue an update to a stable branch: https://fedoraproject.org/wiki/Updates_Policy More information about the service that created this bug can be found at: https://fedoraproject.org/wiki/Upstream_release_monitoring Please keep in mind that with any upstream change, there may also be packaging changes that need to be made. Specifically, please remember that it is your responsibility to review the new version to ensure that the licensing is still correct and that no non-free or legally problematic items have been added upstream. Based on the information from anitya: https://release-monitoring.org/project/4759/
First build for htslib version 1.9 on rawhide is done. https://koji.fedoraproject.org/koji/packageinfo?packageID=30124 I will build htslib on f31, f30, f29 one by one. You can proceed to update samtools to the latest version. :)
Now htslib 1.9 is available on rawhide. It will be available on f31, f30, f29 after days. Now they are on bodhi. https://bodhi.fedoraproject.org/updates/?packages=htslib I sent a pull-request to update samtools to the latest version 1.9 replacing the python2 with python3. https://src.fedoraproject.org/rpms/samtools/pull-request/1 Could you review it? Thanks.
* samtools is on Bodhi rawhide (f32) now. It will be released to f31 and f30 later. * New RPM package: bcftools is on Bodhi rawhide (f32), f31 and f30. bcftools is separated from samtools version 1.X.
FEDORA-2019-b41731b712 has been submitted as an update to Fedora 30. https://bodhi.fedoraproject.org/updates/FEDORA-2019-b41731b712
FEDORA-2019-5b7f10b900 has been submitted as an update to Fedora 31. https://bodhi.fedoraproject.org/updates/FEDORA-2019-5b7f10b900
FYI samtools 1.10 (and htslib 1.10 and bcftools 1.10) have now been released.
samtools-1.9-1.fc30 has been pushed to the Fedora 30 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-b41731b712
samtools-1.9-1.fc31 has been pushed to the Fedora 31 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-5b7f10b900
samtools-1.9-1.fc31 has been pushed to the Fedora 31 stable repository. If problems still persist, please make note of it in this bug report.
samtools-1.9-1.fc30 has been pushed to the Fedora 30 stable repository. If problems still persist, please make note of it in this bug report.
FEDORA-EPEL-2020-4ae342f54f has been submitted as an update to Fedora EPEL 8. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-4ae342f54f
FEDORA-EPEL-2020-4ae342f54f has been pushed to the Fedora EPEL 8 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-4ae342f54f See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-EPEL-2020-fa4b8b21d3 has been pushed to the Fedora EPEL 7 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-fa4b8b21d3 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-EPEL-2020-4ae342f54f has been pushed to the Fedora EPEL 8 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-EPEL-2020-fa4b8b21d3 has been pushed to the Fedora EPEL 7 stable repository. If problem still persists, please make note of it in this bug report.