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This bug is created as a clone of upstream ticket:
https://fedorahosted.org/freeipa/ticket/4632

Since ipactl start starts dirsrv first, the stop operation should keep dirsrv running the longest.

There are some weird interactions possible when dirsrv is not around and other FreeIPA services are (for example see https://fedorahosted.org/bind-dyndb-ldap/ticket/140).

Also, looking at the source of ./install/tools/ipactl, ipa_stop stops all the services but dirsrv in the reverse order

{{{
      for svc in reversed(svc_list):
}}}

Fixed upstream:

master:
9335552418e515cd97da549da403447e5cae842c Stop dirsrv last in ipactl stop.

ipa-4-1:
25abb1154b7b9b6164612f624143bc583e896b12 Stop dirsrv last in ipactl stop.

Verified.

IPA version:
============
[root@dhcp207-214 ~]# rpm -q ipa-server
ipa-server-4.1.0-12.el7.x86_64
[root@dhcp207-214 ~]# 

[root@dhcp207-214 ~]# ipactl stop
Stopping ipa-otpd Service
Stopping pki-tomcatd Service
Stopping httpd Service
Stopping ipa_memcached Service
Stopping named Service
Stopping kadmin Service
Stopping krb5kdc Service
Stopping Directory Service
ipa: INFO: The ipactl command was successful
[root@dhcp207-214 ~]#

Since the problem described in this bug report should be
resolved in a recent advisory, it has been closed with a
resolution of ERRATA.

For information on the advisory, and where to find the updated
files, follow the link below.

If the solution does not work for you, open a new bug report.

https://rhn.redhat.com/errata/RHSA-2015-0442.html