Description of problem:

When execute "ostree admin upgrade -r" which suppose to upgrade the system and reboot it afterwards I encounter the following error:

** (pkttyagent:1523): WARNING **: Unable to register authentication agent: Timeout was reached
Error registering authentication agent: Timeout was reached (g-io-error-quark, 24)
Failed to start reboot.target: Connection timed out
error: Child process exited with code 1

Version-Release number of selected component (if applicable):
Fedora-atomic Version: 22 both bare metal and raw disk deployed to VirtualBox


How reproducible:

-bash-4.3# ostree admin status
* fedora-atomic 06a63ecfcf053d1625e9ddf406429eef3c7fe3ecccbe636a54b90175a5899e7d.0
    Version: 22.17
    origin refspec: fedora-atomic:fedora-atomic/f22/x86_64/docker-host

-bash-4.3# ostree admin upgrade -r

57 metadata, 390 content objects fetched; 128092 KiB transferred in 89 seconds
Copying /etc changes: 25 modified, 0 removed, 41 added
Transaction complete; bootconfig swap: yes deployment count change: 1

** (pkttyagent:1523): WARNING **: Unable to register authentication agent: Timeout was reached
Error registering authentication agent: Timeout was reached (g-io-error-quark, 24)
Failed to start reboot.target: Connection timed out
error: Child process exited with code 1
Actual results:


Expected results:
Expected to reboot the system after an upgrade.

Additional info:
Considering journal during the execution of the above command seems the reason for this error is SELinux.

May 28 12:50:03 atomic-01.host kernel: SELinux:  Context system_u:object_r:systemd_timedated_unit_file_t:s0 is not valid (left unmapped).
May 28 12:51:50 atomic-01.host audit[654]: <audit-1107> pid=654 uid=81 auid=4294967295 ses=4294967295 subj=system_u:system_r:system_dbusd_t:s0-s0:c0.c1023 msg='avc:  denied  { send_msg } for msgtype=method_return dest=:1.15 spid=672 tpid=1523 scontext=system_u:system_r:policykit_t:s0 tcontext=unconfined_u:system_r:install_t:s0-s0:c0.c1023 tclass=dbus
                                               exe="/usr/bin/dbus-daemon" sauid=81 hostname=? addr=? terminal=?'
May 28 12:52:15 atomic-01.host polkitd[672]: Registered Authentication Agent for unix-process:1521:32024 (system bus name :1.15 [/usr/bin/pkttyagent --notify-fd 5 --fallback], object path /org/freedesktop/PolicyKit1/AuthenticationAgent, locale en_US.UTF-8)
May 28 12:52:15 atomic-01.host audit[654]: <audit-1107> pid=654 uid=81 auid=4294967295 ses=4294967295 subj=system_u:system_r:system_dbusd_t:s0-s0:c0.c1023 msg='avc:  denied  { send_msg } for msgtype=signal interface=org.freedesktop.PolicyKit1.Authority member=Changed dest=org.freedesktop.DBus spid=672 tpid=1523 scontext=system_u:system_r:policykit_t:s0 tcontext=unconfined_u:system_r:install_t:s0-s0:c0.c1023 tclass=dbus
                                               exe="/usr/bin/dbus-daemon" sauid=81 hostname=? addr=? terminal=?'
May 28 12:52:15 atomic-01.host audit[654]: <audit-1107> pid=654 uid=81 auid=4294967295 ses=4294967295 subj=system_u:system_r:system_dbusd_t:s0-s0:c0.c1023 msg='avc:  denied  { send_msg } for msgtype=method_return dest=:1.15 spid=672 tpid=1523 scontext=system_u:system_r:policykit_t:s0 tcontext=unconfined_u:system_r:install_t:s0-s0:c0.c1023 tclass=dbus
                                               exe="/usr/bin/dbus-daemon" sauid=81 hostname=? addr=? terminal=?'
May 28 12:52:40 atomic-01.host polkitd[672]: Unregistered Authentication Agent for unix-process:1521:32024 (system bus name :1.15, object path /org/freedesktop/PolicyKit1/AuthenticationAgent, locale en_US.UTF-8) (disconnected from bus)


Once I switch SELinux to Permissive mode all works as expected.