Bug 1239119 - BEDTools is FTBFS on 32 bit platforms
Summary: BEDTools is FTBFS on 32 bit platforms
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: BEDTools
Version: 23
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Adam Huffman
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: F-ExcludeArch-ARM
TreeView+ depends on / blocked
 
Reported: 2015-07-03 15:13 UTC by Peter Robinson
Modified: 2015-07-18 05:51 UTC (History)
1 user (show)

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2015-07-18 05:51:06 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description Peter Robinson 2015-07-03 15:13:54 UTC
- Building in src/utils/chromsweep
  * compiling chromsweep.cpp
In file included from BinTree.h:16:0,
                 from BinTree.cpp:1:
../../utils//general/QuickString.h:41:15: error: 'QuickString& QuickString::operator=(size_t)' cannot be overloaded
  QuickString &operator = (size_t);
               ^
../../utils//general/QuickString.h:40:15: error: with 'QuickString& QuickString::operator=(uint32_t)'
  QuickString &operator = (uint32_t);
               ^
../../utils//general/QuickString.h:50:15: error: 'QuickString& QuickString::operator+=(size_t)' cannot be overloaded
  QuickString &operator += (size_t);
               ^
../../utils//general/QuickString.h:49:15: error: with 'QuickString& QuickString::operator+=(uint32_t)'
  QuickString &operator += (uint32_t);
               ^
../../utils//general/QuickString.h:76:7: error: 'void QuickString::append(size_t)' cannot be overloaded
  void append(size_t num);
       ^
../../utils//general/QuickString.h:75:7: error: with 'void QuickString::append(uint32_t)'
  void append(uint32_t num);
       ^
- Building in src/utils/Contexts
  * compiling ContextBase.cpp
Makefile:29: recipe for target '../../../obj//BinTree.o' failed
make[1]: *** [../../../obj//BinTree.o] Error 1
Makefile:176: recipe for target 'src/utils/BinTree' failed

Comment 1 Peter Robinson 2015-07-03 15:49:35 UTC
Actually it's i686 too

Comment 2 Adam Huffman 2015-07-04 05:49:22 UTC
I've already contacted upstream about this, but I hadn't created a bug here, so thanks.

The upstream issue is at:

https://github.com/arq5x/bedtools2/issues/267

Comment 3 Adam Huffman 2015-07-12 06:49:26 UTC
Disabled all 32-bit builds for now, so that at least the package isn't retired next week.

Comment 4 Jan Kurik 2015-07-15 13:50:57 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 23 development cycle.
Changing version to '23'.

(As we did not run this process for some time, it could affect also pre-Fedora 23 development
cycle bugs. We are very sorry. It will help us with cleanup during Fedora 23 End Of Life. Thank you.)

More information and reason for this action is here:
https://fedoraproject.org/wiki/BugZappers/HouseKeeping/Fedora23

Comment 5 Adam Huffman 2015-07-18 05:51:06 UTC
A patch from upstream, that should be included in the next release, has fixed this problem.


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