RHEL Engineering is moving the tracking of its product development work on RHEL 6 through RHEL 9 to Red Hat Jira (issues.redhat.com). If you're a Red Hat customer, please continue to file support cases via the Red Hat customer portal. If you're not, please head to the "RHEL project" in Red Hat Jira and file new tickets here. Individual Bugzilla bugs in the statuses "NEW", "ASSIGNED", and "POST" are being migrated throughout September 2023. Bugs of Red Hat partners with an assigned Engineering Partner Manager (EPM) are migrated in late September as per pre-agreed dates. Bugs against components "kernel", "kernel-rt", and "kpatch" are only migrated if still in "NEW" or "ASSIGNED". If you cannot log in to RH Jira, please consult article #7032570. That failing, please send an e-mail to the RH Jira admins at rh-issues@redhat.com to troubleshoot your issue as a user management inquiry. The email creates a ServiceNow ticket with Red Hat. Individual Bugzilla bugs that are migrated will be moved to status "CLOSED", resolution "MIGRATED", and set with "MigratedToJIRA" in "Keywords". The link to the successor Jira issue will be found under "Links", have a little "two-footprint" icon next to it, and direct you to the "RHEL project" in Red Hat Jira (issue links are of type "https://issues.redhat.com/browse/RHEL-XXXX", where "X" is a digit). This same link will be available in a blue banner at the top of the page informing you that that bug has been migrated.
Bug 1254166 - xorg-x11-server freezes using R function X11() after updating to centos 6.7
Summary: xorg-x11-server freezes using R function X11() after updating to centos 6.7
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Red Hat Enterprise Linux 6
Classification: Red Hat
Component: xorg-x11-server
Version: 6.7
Hardware: x86_64
OS: Linux
unspecified
unspecified
Target Milestone: rc
: ---
Assignee: Adam Jackson
QA Contact: Desktop QE
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2015-08-17 10:28 UTC by Pablo HC
Modified: 2019-10-10 10:05 UTC (History)
4 users (show)

Fixed In Version: xorg-x11-server-1.17.4-8.el6
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2016-05-10 19:54:38 UTC
Target Upstream Version:
Embargoed:


Attachments (Terms of Use)


Links
System ID Private Priority Status Summary Last Updated
Red Hat Product Errata RHBA-2016:0761 0 normal SHIPPED_LIVE X.Org X11 server and drivers bug fix and enhancement update 2016-05-10 22:33:00 UTC

Description Pablo HC 2015-08-17 10:28:32 UTC
Description of problem:
After upgrading to centos 6.7, the function X11() in R (cran) freezes.
X11 draws a window, but nothing inside, the window cannot even be moved, and the only way to recover is killing R.

Version-Release number of selected component (if applicable):
centos 6.7
xorg-x11-server-Xort-1.15.0-36.elg.x86_64 ??

How reproducible:

I have tried with centos official R binary, but also with my own compiled R version, so an R problem should be discarded.

Steps to Reproduce:
1. Upgrade to centos 6.7 from 6.6
2. Execute R binary (from official repo or installed by source)
3. In the R console, type X11()

Actual results:
Window pop-up, but R freezes.

Expected results:


Additional info:

Comment 2 Alex Hartsell 2015-10-23 16:25:32 UTC
I have found that R is opening the window and waiting for an ExposureEvent, which it never receives causing the window to wait indefinitely and not paint. I believe this is related to the recent 0001-composite-Implement-backing-store-Always.patch in xorg-x11-server.

As a workaround, things work as expected if compositing is disabled in X. It seems only disabling the backing store is not enough.

Comment 5 Rudy 2016-04-12 19:58:46 UTC
(In reply to Alex Hartsell from comment #2)
> I have found that R is opening the window and waiting for an ExposureEvent,
> which it never receives causing the window to wait indefinitely and not
> paint. I believe this is related to the recent
> 0001-composite-Implement-backing-store-Always.patch in xorg-x11-server.
> 
> As a workaround, things work as expected if compositing is disabled in X. It
> seems only disabling the backing store is not enough.

Can confirm this bug happening, disabling composite fixed the issue! Thanks Alex!

Comment 8 errata-xmlrpc 2016-05-10 19:54:38 UTC
Since the problem described in this bug report should be
resolved in a recent advisory, it has been closed with a
resolution of ERRATA.

For information on the advisory, and where to find the updated
files, follow the link below.

If the solution does not work for you, open a new bug report.

https://rhn.redhat.com/errata/RHBA-2016-0761.html


Note You need to log in before you can comment on or make changes to this bug.