Bug 1254619 - BEDTools installation error
Summary: BEDTools installation error
Keywords:
Status: CLOSED NEXTRELEASE
Alias: None
Product: Fedora
Classification: Fedora
Component: BEDTools
Version: 22
Hardware: x86_64
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Adam Huffman
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
: 1262838 (view as bug list)
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2015-08-18 14:02 UTC by Tony Schreiner
Modified: 2015-09-15 19:50 UTC (History)
2 users (show)

Fixed In Version: 2.25.0-1.fc22
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2015-09-15 19:50:29 UTC
Type: Bug


Attachments (Terms of Use)

Description Tony Schreiner 2015-08-18 14:02:33 UTC
Description of problem:
With update to 2.24.0-5.fc22, the installation/update fails with
Error: Transaction check error:
  file /usr/bin from install of BEDTools-2.24.0-5.fc22.x86_64 conflicts with file from package filesystem-3.2-32.fc22.x86_64


Version-Release number of selected component (if applicable):
2.24.0-5.fc22

How reproducible:
Every time

Steps to Reproduce:
1. install or update BEDTools with dnf
2.
3.

Actual results:
Error: Transaction check error:
  file /usr/bin from install of BEDTools-2.24.0-5.fc22.x86_64 conflicts with file from package filesystem-3.2-32.fc22.x86_64


Expected results:
Successful installation

Additional info:
/usr/bin should not be claimed by this tool, suggest change to spec file
diff {a,b}/BEDTools.spec
99c99
< %{_bindir}*
---
> %{_bindir}/*

Comment 1 Fedora Update System 2015-08-23 12:15:18 UTC
BEDTools-2.24.0-6.fc22 has been submitted as an update to Fedora 22. https://bugzilla.redhat.com/show_bug.cgi?id=1254619

Comment 2 Fedora Update System 2015-08-23 17:19:37 UTC
BEDTools-2.24.0-6.fc22 has been pushed to the Fedora 22 testing repository. If problems still persist, please make note of it in this bug report.\nIf you want to test the update, you can install it with \n su -c 'yum --enablerepo=updates-testing update BEDTools'. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-14014

Comment 3 Fedora Update System 2015-09-06 21:48:50 UTC
BEDTools-2.25.0-1.fc22 has been submitted as an update to Fedora 22. https://bodhi.fedoraproject.org/updates/FEDORA-2015-15234

Comment 4 Fedora Update System 2015-09-07 18:19:38 UTC
BEDTools-2.25.0-1.fc22 has been pushed to the Fedora 22 testing repository. If problems still persist, please make note of it in this bug report.\nIf you want to test the update, you can install it with \n su -c 'yum --enablerepo=updates-testing update BEDTools'. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-15234

Comment 5 Adam Huffman 2015-09-15 05:46:41 UTC
*** Bug 1262838 has been marked as a duplicate of this bug. ***

Comment 6 Fedora Update System 2015-09-15 19:50:28 UTC
BEDTools-2.25.0-1.fc22 has been pushed to the Fedora 22 stable repository. If problems still persist, please make note of it in this bug report.


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